Hb_007479_030

Information

Type -
Description -
Location Contig7479: 35680-37677
Sequence    

Annotation

kegg
ID tcc:TCM_001116
description Asparagine synthetase 3 isoform 1
nr
ID XP_012090631.1
description PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
swissprot
ID Q9LFU1
description Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis thaliana GN=ASN3 PE=2 SV=1
trembl
ID A0A067LEE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24045 PE=4 SV=1
Gene Ontology
ID GO:0004066
description asparagine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007479_030 0.0 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
2 Hb_033152_040 0.209443983 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
3 Hb_000816_220 0.223810465 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
4 Hb_000387_090 0.2275181136 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
5 Hb_013253_030 0.2472528886 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
6 Hb_000445_200 0.2498196075 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
7 Hb_001484_080 0.2526465465 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
8 Hb_000120_900 0.2644531126 - - catalase [Hevea brasiliensis]
9 Hb_114861_010 0.2720580366 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
10 Hb_000043_100 0.2742635236 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
11 Hb_003752_060 0.2801426282 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
12 Hb_000062_520 0.2805314373 - - conserved hypothetical protein [Ricinus communis]
13 Hb_162633_010 0.2898533268 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
14 Hb_003106_170 0.2910198253 - - Endonuclease III, putative [Ricinus communis]
15 Hb_005344_030 0.2915407709 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
16 Hb_007044_250 0.2936576701 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000184_030 0.29402751 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_158235_010 0.2972123598 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_000329_580 0.303087709 - - malate dehydrogenase, putative [Ricinus communis]
20 Hb_000699_080 0.3036751341 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007479_030 Hb_007479_030 Hb_033152_040 Hb_033152_040 Hb_007479_030--Hb_033152_040 Hb_000816_220 Hb_000816_220 Hb_007479_030--Hb_000816_220 Hb_000387_090 Hb_000387_090 Hb_007479_030--Hb_000387_090 Hb_013253_030 Hb_013253_030 Hb_007479_030--Hb_013253_030 Hb_000445_200 Hb_000445_200 Hb_007479_030--Hb_000445_200 Hb_001484_080 Hb_001484_080 Hb_007479_030--Hb_001484_080 Hb_114861_010 Hb_114861_010 Hb_033152_040--Hb_114861_010 Hb_006538_180 Hb_006538_180 Hb_033152_040--Hb_006538_180 Hb_033152_040--Hb_001484_080 Hb_000184_030 Hb_000184_030 Hb_033152_040--Hb_000184_030 Hb_033152_040--Hb_000387_090 Hb_000329_520 Hb_000329_520 Hb_000816_220--Hb_000329_520 Hb_159305_010 Hb_159305_010 Hb_000816_220--Hb_159305_010 Hb_000699_080 Hb_000699_080 Hb_000816_220--Hb_000699_080 Hb_003336_020 Hb_003336_020 Hb_000816_220--Hb_003336_020 Hb_000120_900 Hb_000120_900 Hb_000816_220--Hb_000120_900 Hb_000387_090--Hb_000445_200 Hb_001344_030 Hb_001344_030 Hb_000387_090--Hb_001344_030 Hb_116020_010 Hb_116020_010 Hb_000387_090--Hb_116020_010 Hb_000387_090--Hb_013253_030 Hb_000043_100 Hb_000043_100 Hb_013253_030--Hb_000043_100 Hb_158235_010 Hb_158235_010 Hb_013253_030--Hb_158235_010 Hb_013253_030--Hb_000445_200 Hb_009572_010 Hb_009572_010 Hb_013253_030--Hb_009572_010 Hb_013253_030--Hb_000816_220 Hb_000329_580 Hb_000329_580 Hb_013253_030--Hb_000329_580 Hb_000445_200--Hb_000184_030 Hb_000367_140 Hb_000367_140 Hb_000445_200--Hb_000367_140 Hb_001623_600 Hb_001623_600 Hb_000445_200--Hb_001623_600 Hb_007044_250 Hb_007044_250 Hb_001484_080--Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0383185 0 0.0918652 0.0286234 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210489 0.1655 0.0995175 0 0.883285

CAGE analysis