Hb_000329_520

Information

Type -
Description -
Location Contig329: 375915-376994
Sequence    

Annotation

kegg
ID rcu:RCOM_1609630
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_012083853.1
description PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID A0A067KAH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14585 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_520 0.0 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
2 Hb_003336_020 0.1663012535 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
3 Hb_000012_440 0.1919317609 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
4 Hb_000816_220 0.1939621495 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
5 Hb_012940_020 0.1990516762 - - zeaxanthin epoxidase, putative [Ricinus communis]
6 Hb_000699_080 0.2107671074 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
7 Hb_001213_110 0.210891438 - - SOUL heme-binding family protein [Populus trichocarpa]
8 Hb_159305_010 0.2138178876 - - rpl2 [Jatropha curcas]
9 Hb_003952_050 0.2182002402 - - beta-galactosidase, putative [Ricinus communis]
10 Hb_006816_040 0.2196950721 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
11 Hb_000120_900 0.2201728881 - - catalase [Hevea brasiliensis]
12 Hb_000359_070 0.2235697466 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
13 Hb_001085_200 0.2269679021 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
14 Hb_010589_030 0.2271447943 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
15 Hb_068804_110 0.2305639447 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
16 Hb_028960_010 0.2307592083 - - phosphoglycerate kinase, putative [Ricinus communis]
17 Hb_189099_020 0.2332709603 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
18 Hb_088080_030 0.2344242372 - - ribosomal protein S4 [Hevea brasiliensis]
19 Hb_002686_060 0.2346506033 - - conserved hypothetical protein [Ricinus communis]
20 Hb_156850_020 0.234935253 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]

Gene co-expression network

sample Hb_000329_520 Hb_000329_520 Hb_003336_020 Hb_003336_020 Hb_000329_520--Hb_003336_020 Hb_000012_440 Hb_000012_440 Hb_000329_520--Hb_000012_440 Hb_000816_220 Hb_000816_220 Hb_000329_520--Hb_000816_220 Hb_012940_020 Hb_012940_020 Hb_000329_520--Hb_012940_020 Hb_000699_080 Hb_000699_080 Hb_000329_520--Hb_000699_080 Hb_001213_110 Hb_001213_110 Hb_000329_520--Hb_001213_110 Hb_003336_020--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_003336_020--Hb_028960_010 Hb_003336_020--Hb_000699_080 Hb_000359_070 Hb_000359_070 Hb_003336_020--Hb_000359_070 Hb_002686_060 Hb_002686_060 Hb_003336_020--Hb_002686_060 Hb_156850_020 Hb_156850_020 Hb_003336_020--Hb_156850_020 Hb_004987_030 Hb_004987_030 Hb_000012_440--Hb_004987_030 Hb_005656_150 Hb_005656_150 Hb_000012_440--Hb_005656_150 Hb_000012_440--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_000012_440--Hb_006925_030 Hb_088080_030 Hb_088080_030 Hb_000012_440--Hb_088080_030 Hb_003032_090 Hb_003032_090 Hb_000012_440--Hb_003032_090 Hb_159305_010 Hb_159305_010 Hb_000816_220--Hb_159305_010 Hb_000816_220--Hb_000699_080 Hb_000816_220--Hb_003336_020 Hb_000120_900 Hb_000120_900 Hb_000816_220--Hb_000120_900 Hb_007479_030 Hb_007479_030 Hb_000816_220--Hb_007479_030 Hb_012940_020--Hb_028960_010 Hb_012940_020--Hb_156850_020 Hb_068804_110 Hb_068804_110 Hb_012940_020--Hb_068804_110 Hb_106552_030 Hb_106552_030 Hb_012940_020--Hb_106552_030 Hb_012940_020--Hb_000359_070 Hb_000699_080--Hb_002686_060 Hb_000699_080--Hb_006925_030 Hb_000038_020 Hb_000038_020 Hb_000699_080--Hb_000038_020 Hb_000699_080--Hb_000120_900 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_000879_220 Hb_000879_220 Hb_001213_110--Hb_000879_220 Hb_003261_010 Hb_003261_010 Hb_001213_110--Hb_003261_010 Hb_001959_100 Hb_001959_100 Hb_001213_110--Hb_001959_100 Hb_003377_010 Hb_003377_010 Hb_001213_110--Hb_003377_010 Hb_000417_220 Hb_000417_220 Hb_001213_110--Hb_000417_220 Hb_000200_360 Hb_000200_360 Hb_001213_110--Hb_000200_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0201466 0.0605168 0.153227 0.458586 0.0970504 0.0394615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.230422 0.144991 0.0670404 0 3.27991

CAGE analysis