Hb_000879_220

Information

Type -
Description -
Location Contig879: 241659-244379
Sequence    

Annotation

kegg
ID rcu:RCOM_1587370
description oligopeptide transporter, putative
nr
ID XP_012068217.1
description PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
swissprot
ID Q9SHY2
description Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1
trembl
ID B9R700
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_1587370 PE=4 SV=1
Gene Ontology
ID GO:0055085
description probable metal-nicotianamine transporter ysl7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_220 0.0 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
2 Hb_001213_110 0.13876421 - - SOUL heme-binding family protein [Populus trichocarpa]
3 Hb_001959_100 0.1577697006 - - ammonium transporter, putative [Ricinus communis]
4 Hb_019845_010 0.1697302438 - - protease inhibitor protein [Hevea brasiliensis]
5 Hb_001478_030 0.1705652731 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002119_150 0.1836048074 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
7 Hb_000340_240 0.1860731646 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000538_110 0.1875505437 - - sucrose synthase 1 [Hevea brasiliensis]
9 Hb_000155_230 0.1905990411 - - rac gtpase, putative [Ricinus communis]
10 Hb_189208_080 0.1907457218 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
11 Hb_000417_220 0.1908005253 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
12 Hb_000254_080 0.1926798814 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
13 Hb_011214_080 0.1944551547 - - sucrose synthase 1 [Hevea brasiliensis]
14 Hb_003038_070 0.195463106 - - syntaxin, putative [Ricinus communis]
15 Hb_012760_120 0.1956281779 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
16 Hb_000997_370 0.1969719059 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
17 Hb_028818_020 0.1978401486 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
18 Hb_004837_080 0.1997994977 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
19 Hb_001832_170 0.2000114475 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
20 Hb_140595_030 0.2000233382 - - -

Gene co-expression network

sample Hb_000879_220 Hb_000879_220 Hb_001213_110 Hb_001213_110 Hb_000879_220--Hb_001213_110 Hb_001959_100 Hb_001959_100 Hb_000879_220--Hb_001959_100 Hb_019845_010 Hb_019845_010 Hb_000879_220--Hb_019845_010 Hb_001478_030 Hb_001478_030 Hb_000879_220--Hb_001478_030 Hb_002119_150 Hb_002119_150 Hb_000879_220--Hb_002119_150 Hb_000340_240 Hb_000340_240 Hb_000879_220--Hb_000340_240 Hb_003261_010 Hb_003261_010 Hb_001213_110--Hb_003261_010 Hb_001213_110--Hb_001959_100 Hb_003377_010 Hb_003377_010 Hb_001213_110--Hb_003377_010 Hb_000417_220 Hb_000417_220 Hb_001213_110--Hb_000417_220 Hb_000200_360 Hb_000200_360 Hb_001213_110--Hb_000200_360 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_001959_100--Hb_000200_360 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_000227_100 Hb_000227_100 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_002968_050 Hb_002968_050 Hb_019845_010--Hb_002968_050 Hb_019845_010--Hb_003377_010 Hb_019845_010--Hb_003261_010 Hb_019845_010--Hb_001959_100 Hb_019845_010--Hb_000340_240 Hb_019925_010 Hb_019925_010 Hb_001478_030--Hb_019925_010 Hb_000090_010 Hb_000090_010 Hb_001478_030--Hb_000090_010 Hb_006483_020 Hb_006483_020 Hb_001478_030--Hb_006483_020 Hb_004117_230 Hb_004117_230 Hb_001478_030--Hb_004117_230 Hb_028818_020 Hb_028818_020 Hb_001478_030--Hb_028818_020 Hb_001123_300 Hb_001123_300 Hb_001478_030--Hb_001123_300 Hb_004837_080 Hb_004837_080 Hb_002119_150--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_002119_150--Hb_000254_080 Hb_001269_540 Hb_001269_540 Hb_002119_150--Hb_001269_540 Hb_002119_150--Hb_000538_110 Hb_000260_520 Hb_000260_520 Hb_002119_150--Hb_000260_520 Hb_080797_010 Hb_080797_010 Hb_002119_150--Hb_080797_010 Hb_000340_240--Hb_012760_120 Hb_000220_060 Hb_000220_060 Hb_000340_240--Hb_000220_060 Hb_000340_240--Hb_000538_110 Hb_010738_020 Hb_010738_020 Hb_000340_240--Hb_010738_020 Hb_000340_240--Hb_011214_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0164107 0.0155498 0.170193 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0225934 0.0177772 0 0.0141452 0.375685

CAGE analysis