Hb_003377_010

Information

Type -
Description -
Location Contig3377: 16955-20961
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06140g
description POPTRDRAFT_825135; hypothetical protein
nr
ID XP_002323341.2
description hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IIC6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0016s06140g PE=4 SV=2
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at1g53440

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003377_010 0.0 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
2 Hb_001213_110 0.1729274784 - - SOUL heme-binding family protein [Populus trichocarpa]
3 Hb_003261_010 0.1860632473 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
4 Hb_019845_010 0.1864479265 - - protease inhibitor protein [Hevea brasiliensis]
5 Hb_000329_580 0.2080485454 - - malate dehydrogenase, putative [Ricinus communis]
6 Hb_000879_220 0.231363666 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
7 Hb_000329_520 0.2424792164 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
8 Hb_002968_050 0.2439125368 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_000200_360 0.2444266906 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
10 Hb_000220_060 0.2460660284 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
11 Hb_000340_240 0.2482381161 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001959_100 0.2505662242 - - ammonium transporter, putative [Ricinus communis]
13 Hb_019613_010 0.2603595576 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000431_120 0.272072304 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
15 Hb_000417_220 0.2728410429 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
16 Hb_000816_220 0.2746108274 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
17 Hb_001369_700 0.2754858426 - - -
18 Hb_003171_080 0.2778964724 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000061_290 0.2805626234 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001124_200 0.2810290283 - - hypothetical protein B456_011G186000 [Gossypium raimondii]

Gene co-expression network

sample Hb_003377_010 Hb_003377_010 Hb_001213_110 Hb_001213_110 Hb_003377_010--Hb_001213_110 Hb_003261_010 Hb_003261_010 Hb_003377_010--Hb_003261_010 Hb_019845_010 Hb_019845_010 Hb_003377_010--Hb_019845_010 Hb_000329_580 Hb_000329_580 Hb_003377_010--Hb_000329_580 Hb_000879_220 Hb_000879_220 Hb_003377_010--Hb_000879_220 Hb_000329_520 Hb_000329_520 Hb_003377_010--Hb_000329_520 Hb_001213_110--Hb_000879_220 Hb_001213_110--Hb_003261_010 Hb_001959_100 Hb_001959_100 Hb_001213_110--Hb_001959_100 Hb_000417_220 Hb_000417_220 Hb_001213_110--Hb_000417_220 Hb_000200_360 Hb_000200_360 Hb_001213_110--Hb_000200_360 Hb_003261_010--Hb_001959_100 Hb_000340_240 Hb_000340_240 Hb_003261_010--Hb_000340_240 Hb_003261_010--Hb_000200_360 Hb_000220_060 Hb_000220_060 Hb_003261_010--Hb_000220_060 Hb_003261_010--Hb_000329_580 Hb_002968_050 Hb_002968_050 Hb_003261_010--Hb_002968_050 Hb_019845_010--Hb_000879_220 Hb_019845_010--Hb_002968_050 Hb_019845_010--Hb_003261_010 Hb_019845_010--Hb_001959_100 Hb_019845_010--Hb_000340_240 Hb_019613_010 Hb_019613_010 Hb_000329_580--Hb_019613_010 Hb_000329_580--Hb_002968_050 Hb_000329_580--Hb_001213_110 Hb_000329_580--Hb_000200_360 Hb_011053_020 Hb_011053_020 Hb_000329_580--Hb_011053_020 Hb_000879_220--Hb_001959_100 Hb_001478_030 Hb_001478_030 Hb_000879_220--Hb_001478_030 Hb_002119_150 Hb_002119_150 Hb_000879_220--Hb_002119_150 Hb_000879_220--Hb_000340_240 Hb_003336_020 Hb_003336_020 Hb_000329_520--Hb_003336_020 Hb_000012_440 Hb_000012_440 Hb_000329_520--Hb_000012_440 Hb_000816_220 Hb_000816_220 Hb_000329_520--Hb_000816_220 Hb_012940_020 Hb_012940_020 Hb_000329_520--Hb_012940_020 Hb_000699_080 Hb_000699_080 Hb_000329_520--Hb_000699_080 Hb_000329_520--Hb_001213_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0367207 0 0.0144838 1.07294 0 0.0193943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209754 0.329985 0.122593 0.0132258 2.86372

CAGE analysis