Hb_001478_030

Information

Type -
Description -
Location Contig1478: 14873-15342
Sequence    

Annotation

kegg
ID rcu:RCOM_1508640
description hypothetical protein
nr
ID XP_002511316.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001478_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019925_010 0.1230251672 - - PREDICTED: long-chain-alcohol oxidase FAO4A-like [Jatropha curcas]
3 Hb_000090_010 0.1377998372 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
4 Hb_006483_020 0.1380140084 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
5 Hb_004117_230 0.1385360815 - - lipid transfer precursor protein [Hevea brasiliensis]
6 Hb_028818_020 0.1406061542 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
7 Hb_001123_300 0.1443981906 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
8 Hb_000462_040 0.1447559722 - - ATSMC2, putative [Ricinus communis]
9 Hb_044380_010 0.1452893514 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
10 Hb_034507_030 0.145487062 - - PREDICTED: laccase-4-like [Jatropha curcas]
11 Hb_000377_130 0.1484209558 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
12 Hb_000749_280 0.1493803837 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
13 Hb_004994_230 0.1494558774 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
14 Hb_001221_250 0.1515646511 - - -
15 Hb_006755_030 0.1518655496 - - BURP domain-containing protein, putative [Theobroma cacao]
16 Hb_003038_070 0.1529108607 - - syntaxin, putative [Ricinus communis]
17 Hb_001014_180 0.1538957434 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
18 Hb_101705_040 0.1554404095 - - cytochrome P450, putative [Ricinus communis]
19 Hb_005827_020 0.1570625774 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
20 Hb_000176_050 0.1575616568 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001478_030 Hb_001478_030 Hb_019925_010 Hb_019925_010 Hb_001478_030--Hb_019925_010 Hb_000090_010 Hb_000090_010 Hb_001478_030--Hb_000090_010 Hb_006483_020 Hb_006483_020 Hb_001478_030--Hb_006483_020 Hb_004117_230 Hb_004117_230 Hb_001478_030--Hb_004117_230 Hb_028818_020 Hb_028818_020 Hb_001478_030--Hb_028818_020 Hb_001123_300 Hb_001123_300 Hb_001478_030--Hb_001123_300 Hb_001221_250 Hb_001221_250 Hb_019925_010--Hb_001221_250 Hb_125181_010 Hb_125181_010 Hb_019925_010--Hb_125181_010 Hb_019925_010--Hb_000090_010 Hb_019925_010--Hb_006483_020 Hb_101705_040 Hb_101705_040 Hb_019925_010--Hb_101705_040 Hb_004994_230 Hb_004994_230 Hb_000090_010--Hb_004994_230 Hb_000090_010--Hb_101705_040 Hb_034507_030 Hb_034507_030 Hb_000090_010--Hb_034507_030 Hb_000090_010--Hb_006483_020 Hb_002311_020 Hb_002311_020 Hb_000090_010--Hb_002311_020 Hb_000090_010--Hb_028818_020 Hb_006483_020--Hb_034507_030 Hb_006483_020--Hb_004994_230 Hb_000462_040 Hb_000462_040 Hb_006483_020--Hb_000462_040 Hb_006483_020--Hb_004117_230 Hb_007281_010 Hb_007281_010 Hb_006483_020--Hb_007281_010 Hb_004920_150 Hb_004920_150 Hb_004117_230--Hb_004920_150 Hb_004117_230--Hb_034507_030 Hb_001014_180 Hb_001014_180 Hb_004117_230--Hb_001014_180 Hb_004117_230--Hb_007281_010 Hb_004117_230--Hb_000462_040 Hb_000155_230 Hb_000155_230 Hb_028818_020--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_028818_020--Hb_001105_150 Hb_028818_020--Hb_001123_300 Hb_028818_020--Hb_004994_230 Hb_028818_020--Hb_101705_040 Hb_028818_020--Hb_034507_030 Hb_008695_060 Hb_008695_060 Hb_001123_300--Hb_008695_060 Hb_001123_300--Hb_000462_040 Hb_008705_080 Hb_008705_080 Hb_001123_300--Hb_008705_080 Hb_001123_300--Hb_034507_030 Hb_001123_300--Hb_000155_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.453472 0.11757 5.01718 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.2674 0 0.36962 7.17521

CAGE analysis