Hb_001213_110

Information

Type -
Description -
Location Contig1213: 133969-134571
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11670g
description POPTRDRAFT_735696; SOUL heme-binding family protein
nr
ID XP_002322949.2
description SOUL heme-binding family protein [Populus trichocarpa]
swissprot
ID Q9SR77
description Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=2 SV=1
trembl
ID B9IG30
description SOUL heme-binding family protein OS=Populus trichocarpa GN=POPTR_0016s11670g PE=4 SV=2
Gene Ontology
ID GO:0005773
description heme-binding-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06525: 133907-134721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_110 0.0 - - SOUL heme-binding family protein [Populus trichocarpa]
2 Hb_000879_220 0.13876421 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
3 Hb_003261_010 0.1603273998 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
4 Hb_001959_100 0.1712498116 - - ammonium transporter, putative [Ricinus communis]
5 Hb_003377_010 0.1729274784 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
6 Hb_000417_220 0.1776332162 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
7 Hb_000200_360 0.1781916794 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
8 Hb_019613_010 0.1786435254 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000340_240 0.1817088861 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000329_580 0.1911952584 - - malate dehydrogenase, putative [Ricinus communis]
11 Hb_011053_020 0.1956248303 - - lipoic acid synthetase, putative [Ricinus communis]
12 Hb_000220_060 0.1974618921 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
13 Hb_001832_170 0.1983664037 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
14 Hb_159308_020 0.200058878 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
15 Hb_019845_010 0.2031901409 - - protease inhibitor protein [Hevea brasiliensis]
16 Hb_002968_050 0.210825389 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_000329_520 0.210891438 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
18 Hb_001221_240 0.2119540927 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000975_170 0.2140221125 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
20 Hb_000684_400 0.2176196237 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]

Gene co-expression network

sample Hb_001213_110 Hb_001213_110 Hb_000879_220 Hb_000879_220 Hb_001213_110--Hb_000879_220 Hb_003261_010 Hb_003261_010 Hb_001213_110--Hb_003261_010 Hb_001959_100 Hb_001959_100 Hb_001213_110--Hb_001959_100 Hb_003377_010 Hb_003377_010 Hb_001213_110--Hb_003377_010 Hb_000417_220 Hb_000417_220 Hb_001213_110--Hb_000417_220 Hb_000200_360 Hb_000200_360 Hb_001213_110--Hb_000200_360 Hb_000879_220--Hb_001959_100 Hb_019845_010 Hb_019845_010 Hb_000879_220--Hb_019845_010 Hb_001478_030 Hb_001478_030 Hb_000879_220--Hb_001478_030 Hb_002119_150 Hb_002119_150 Hb_000879_220--Hb_002119_150 Hb_000340_240 Hb_000340_240 Hb_000879_220--Hb_000340_240 Hb_003261_010--Hb_001959_100 Hb_003261_010--Hb_000340_240 Hb_003261_010--Hb_000200_360 Hb_000220_060 Hb_000220_060 Hb_003261_010--Hb_000220_060 Hb_000329_580 Hb_000329_580 Hb_003261_010--Hb_000329_580 Hb_002968_050 Hb_002968_050 Hb_003261_010--Hb_002968_050 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_001959_100--Hb_000200_360 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_000227_100 Hb_000227_100 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_003377_010--Hb_003261_010 Hb_003377_010--Hb_019845_010 Hb_003377_010--Hb_000329_580 Hb_003377_010--Hb_000879_220 Hb_000329_520 Hb_000329_520 Hb_003377_010--Hb_000329_520 Hb_001832_170 Hb_001832_170 Hb_000417_220--Hb_001832_170 Hb_000061_290 Hb_000061_290 Hb_000417_220--Hb_000061_290 Hb_000130_350 Hb_000130_350 Hb_000417_220--Hb_000130_350 Hb_000417_220--Hb_001959_100 Hb_000251_120 Hb_000251_120 Hb_000417_220--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000417_220--Hb_001001_070 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000200_360--Hb_000227_100 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.262249 3.08355 3.59015 37.3294 0.645977 0.971486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.81334 7.08955 3.44682 4.35981 97.4894

CAGE analysis