Hb_000061_290

Information

Type -
Description -
Location Contig61: 257187-258191
Sequence    

Annotation

kegg
ID rcu:RCOM_1471050
description hypothetical protein
nr
ID XP_002514717.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1471050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50929: 257631-258426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000417_220 0.1538430566 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
3 Hb_012633_060 0.1573400041 - - laccase, putative [Ricinus communis]
4 Hb_000690_170 0.1657923812 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003913_010 0.1834038346 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001276_050 0.1885463589 desease resistance Gene Name: NB-ARC NBS-LRR resistance-like protein 1O [Medicago truncatula]
7 Hb_000270_340 0.1919042789 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
8 Hb_001832_170 0.1922990238 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
9 Hb_000130_350 0.1979404273 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_001221_240 0.1979926394 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003038_070 0.2029598645 - - syntaxin, putative [Ricinus communis]
12 Hb_000200_360 0.2039182734 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
13 Hb_000552_010 0.2077485333 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
14 Hb_000220_060 0.2142215621 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
15 Hb_008695_060 0.2160075767 - - unknown [Populus trichocarpa x Populus deltoides]
16 Hb_004068_010 0.2161144532 - - beta-amyrin synthase [Euphorbia tirucalli]
17 Hb_001141_250 0.2165151431 - - hypothetical protein glysoja_047929, partial [Glycine soja]
18 Hb_008226_010 0.216860658 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
19 Hb_001214_040 0.2172176139 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
20 Hb_031527_010 0.2173147814 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000061_290 Hb_000061_290 Hb_000417_220 Hb_000417_220 Hb_000061_290--Hb_000417_220 Hb_012633_060 Hb_012633_060 Hb_000061_290--Hb_012633_060 Hb_000690_170 Hb_000690_170 Hb_000061_290--Hb_000690_170 Hb_003913_010 Hb_003913_010 Hb_000061_290--Hb_003913_010 Hb_001276_050 Hb_001276_050 Hb_000061_290--Hb_001276_050 Hb_000270_340 Hb_000270_340 Hb_000061_290--Hb_000270_340 Hb_001832_170 Hb_001832_170 Hb_000417_220--Hb_001832_170 Hb_000130_350 Hb_000130_350 Hb_000417_220--Hb_000130_350 Hb_001959_100 Hb_001959_100 Hb_000417_220--Hb_001959_100 Hb_000251_120 Hb_000251_120 Hb_000417_220--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000417_220--Hb_001001_070 Hb_000200_360 Hb_000200_360 Hb_012633_060--Hb_000200_360 Hb_012633_060--Hb_001959_100 Hb_012633_060--Hb_000270_340 Hb_000227_100 Hb_000227_100 Hb_012633_060--Hb_000227_100 Hb_000340_240 Hb_000340_240 Hb_012633_060--Hb_000340_240 Hb_000538_110 Hb_000538_110 Hb_012633_060--Hb_000538_110 Hb_000088_140 Hb_000088_140 Hb_000690_170--Hb_000088_140 Hb_000690_170--Hb_012633_060 Hb_008226_010 Hb_008226_010 Hb_000690_170--Hb_008226_010 Hb_000690_170--Hb_001276_050 Hb_000690_170--Hb_001832_170 Hb_012002_010 Hb_012002_010 Hb_003913_010--Hb_012002_010 Hb_003171_080 Hb_003171_080 Hb_003913_010--Hb_003171_080 Hb_003913_010--Hb_012633_060 Hb_000805_060 Hb_000805_060 Hb_003913_010--Hb_000805_060 Hb_003913_010--Hb_000270_340 Hb_015234_010 Hb_015234_010 Hb_001276_050--Hb_015234_010 Hb_001276_050--Hb_008226_010 Hb_001276_050--Hb_000270_340 Hb_008695_060 Hb_008695_060 Hb_001276_050--Hb_008695_060 Hb_003038_070 Hb_003038_070 Hb_001276_050--Hb_003038_070 Hb_001097_030 Hb_001097_030 Hb_001276_050--Hb_001097_030 Hb_000270_340--Hb_001097_030 Hb_001163_010 Hb_001163_010 Hb_000270_340--Hb_001163_010 Hb_000427_020 Hb_000427_020 Hb_000270_340--Hb_000427_020 Hb_000270_340--Hb_000538_110 Hb_000076_240 Hb_000076_240 Hb_000270_340--Hb_000076_240 Hb_000122_230 Hb_000122_230 Hb_000270_340--Hb_000122_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45921 1.66319 3.42199 56.0195 4.38777 4.0677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6116 0.633762 2.69848 1.08305 88.195

CAGE analysis