Hb_003171_080

Information

Type -
Description -
Location Contig3171: 84017-86270
Sequence    

Annotation

kegg
ID rcu:RCOM_0243480
description hypothetical protein
nr
ID XP_002532520.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2Q1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0243480 PE=4 SV=1
Gene Ontology
ID GO:0016020
description multidrug resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003171_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003906_080 0.1465695068 - - Peroxidase 66 precursor, putative [Ricinus communis]
3 Hb_002311_020 0.1523396148 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
4 Hb_006351_090 0.153047383 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
5 Hb_151290_010 0.1533860901 - - unnamed protein product [Vitis vinifera]
6 Hb_000580_200 0.154422203 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
7 Hb_135887_010 0.1611303407 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_000805_060 0.1634289909 - - laccase, putative [Ricinus communis]
9 Hb_002170_030 0.1641849012 - - PREDICTED: laccase-4-like [Jatropha curcas]
10 Hb_005991_030 0.1667133709 - - copper ion binding protein, putative [Ricinus communis]
11 Hb_009158_040 0.168555689 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
12 Hb_011108_010 0.1701955121 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
13 Hb_023342_010 0.1706029189 - - -
14 Hb_001097_030 0.1713795202 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_004994_230 0.1722511153 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
16 Hb_000111_060 0.1746480547 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
17 Hb_003786_030 0.1751615708 - - BnaUnng00830D [Brassica napus]
18 Hb_008705_080 0.1759542138 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
19 Hb_026198_080 0.1761455163 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
20 Hb_003913_010 0.1761539565 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003171_080 Hb_003171_080 Hb_003906_080 Hb_003906_080 Hb_003171_080--Hb_003906_080 Hb_002311_020 Hb_002311_020 Hb_003171_080--Hb_002311_020 Hb_006351_090 Hb_006351_090 Hb_003171_080--Hb_006351_090 Hb_151290_010 Hb_151290_010 Hb_003171_080--Hb_151290_010 Hb_000580_200 Hb_000580_200 Hb_003171_080--Hb_000580_200 Hb_135887_010 Hb_135887_010 Hb_003171_080--Hb_135887_010 Hb_003906_080--Hb_006351_090 Hb_003906_080--Hb_002311_020 Hb_002170_030 Hb_002170_030 Hb_003906_080--Hb_002170_030 Hb_004994_230 Hb_004994_230 Hb_003906_080--Hb_004994_230 Hb_000805_060 Hb_000805_060 Hb_003906_080--Hb_000805_060 Hb_023342_010 Hb_023342_010 Hb_003906_080--Hb_023342_010 Hb_002311_020--Hb_004994_230 Hb_002311_020--Hb_000805_060 Hb_002311_020--Hb_006351_090 Hb_034507_030 Hb_034507_030 Hb_002311_020--Hb_034507_030 Hb_000090_010 Hb_000090_010 Hb_002311_020--Hb_000090_010 Hb_006351_090--Hb_002170_030 Hb_009158_040 Hb_009158_040 Hb_006351_090--Hb_009158_040 Hb_008705_080 Hb_008705_080 Hb_006351_090--Hb_008705_080 Hb_001053_120 Hb_001053_120 Hb_006351_090--Hb_001053_120 Hb_006351_090--Hb_023342_010 Hb_151290_010--Hb_000580_200 Hb_003786_030 Hb_003786_030 Hb_151290_010--Hb_003786_030 Hb_104014_020 Hb_104014_020 Hb_151290_010--Hb_104014_020 Hb_003025_170 Hb_003025_170 Hb_151290_010--Hb_003025_170 Hb_151290_010--Hb_135887_010 Hb_000023_100 Hb_000023_100 Hb_151290_010--Hb_000023_100 Hb_000580_200--Hb_135887_010 Hb_000580_200--Hb_003786_030 Hb_000580_200--Hb_009158_040 Hb_000580_200--Hb_023342_010 Hb_000580_200--Hb_000023_100 Hb_011108_010 Hb_011108_010 Hb_135887_010--Hb_011108_010 Hb_135887_010--Hb_003786_030 Hb_000724_040 Hb_000724_040 Hb_135887_010--Hb_000724_040 Hb_005228_050 Hb_005228_050 Hb_135887_010--Hb_005228_050 Hb_005991_030 Hb_005991_030 Hb_135887_010--Hb_005991_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0250897 0.382946 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0383887 0 0 0 0.563886

CAGE analysis