Hb_012002_010

Information

Type -
Description -
Location Contig12002: 1-2173
Sequence    

Annotation

kegg
ID cit:102607081
description protein TRANSPARENT TESTA 12-like
nr
ID CAN67339.1
description hypothetical protein VITISV_016116 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AZN5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016116 PE=4 SV=1
Gene Ontology
ID GO:0016020
description multidrug resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012002_010 0.0 - - hypothetical protein VITISV_016116 [Vitis vinifera]
2 Hb_003913_010 0.1527333347 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000664_100 0.1960890336 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
4 Hb_000563_520 0.2003392053 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_003906_080 0.201362279 - - Peroxidase 66 precursor, putative [Ricinus communis]
6 Hb_004393_040 0.2039671481 transcription factor TF Family: RAV PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 [Jatropha curcas]
7 Hb_005991_030 0.2063839172 - - copper ion binding protein, putative [Ricinus communis]
8 Hb_012633_060 0.2066179916 - - laccase, putative [Ricinus communis]
9 Hb_135887_010 0.2073264514 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_006351_090 0.2095455471 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
11 Hb_011108_010 0.2104068727 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
12 Hb_000580_200 0.2104663483 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
13 Hb_002311_020 0.2119803043 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
14 Hb_002170_030 0.2131274594 - - PREDICTED: laccase-4-like [Jatropha curcas]
15 Hb_000805_060 0.2139290823 - - laccase, putative [Ricinus communis]
16 Hb_001097_030 0.214371783 - - nuclear transport factor, putative [Ricinus communis]
17 Hb_001163_010 0.2153125546 - - PREDICTED: syncoilin [Jatropha curcas]
18 Hb_008705_080 0.2161405703 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
19 Hb_001053_120 0.2169187188 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
20 Hb_009158_040 0.2169347348 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]

Gene co-expression network

sample Hb_012002_010 Hb_012002_010 Hb_003913_010 Hb_003913_010 Hb_012002_010--Hb_003913_010 Hb_000664_100 Hb_000664_100 Hb_012002_010--Hb_000664_100 Hb_000563_520 Hb_000563_520 Hb_012002_010--Hb_000563_520 Hb_003906_080 Hb_003906_080 Hb_012002_010--Hb_003906_080 Hb_004393_040 Hb_004393_040 Hb_012002_010--Hb_004393_040 Hb_005991_030 Hb_005991_030 Hb_012002_010--Hb_005991_030 Hb_003171_080 Hb_003171_080 Hb_003913_010--Hb_003171_080 Hb_000061_290 Hb_000061_290 Hb_003913_010--Hb_000061_290 Hb_012633_060 Hb_012633_060 Hb_003913_010--Hb_012633_060 Hb_000805_060 Hb_000805_060 Hb_003913_010--Hb_000805_060 Hb_000270_340 Hb_000270_340 Hb_003913_010--Hb_000270_340 Hb_002965_110 Hb_002965_110 Hb_000664_100--Hb_002965_110 Hb_031527_010 Hb_031527_010 Hb_000664_100--Hb_031527_010 Hb_001520_030 Hb_001520_030 Hb_000664_100--Hb_001520_030 Hb_010488_050 Hb_010488_050 Hb_000664_100--Hb_010488_050 Hb_002739_140 Hb_002739_140 Hb_000664_100--Hb_002739_140 Hb_026317_040 Hb_026317_040 Hb_000563_520--Hb_026317_040 Hb_001163_010 Hb_001163_010 Hb_000563_520--Hb_001163_010 Hb_000580_200 Hb_000580_200 Hb_000563_520--Hb_000580_200 Hb_001053_120 Hb_001053_120 Hb_000563_520--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_000563_520--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_000563_520--Hb_006351_090 Hb_003906_080--Hb_006351_090 Hb_002311_020 Hb_002311_020 Hb_003906_080--Hb_002311_020 Hb_002170_030 Hb_002170_030 Hb_003906_080--Hb_002170_030 Hb_004994_230 Hb_004994_230 Hb_003906_080--Hb_004994_230 Hb_003906_080--Hb_000805_060 Hb_023342_010 Hb_023342_010 Hb_003906_080--Hb_023342_010 Hb_189208_030 Hb_189208_030 Hb_004393_040--Hb_189208_030 Hb_006718_030 Hb_006718_030 Hb_004393_040--Hb_006718_030 Hb_000140_040 Hb_000140_040 Hb_004393_040--Hb_000140_040 Hb_180094_010 Hb_180094_010 Hb_004393_040--Hb_180094_010 Hb_003805_110 Hb_003805_110 Hb_004393_040--Hb_003805_110 Hb_000152_300 Hb_000152_300 Hb_004393_040--Hb_000152_300 Hb_011108_010 Hb_011108_010 Hb_005991_030--Hb_011108_010 Hb_099263_010 Hb_099263_010 Hb_005991_030--Hb_099263_010 Hb_135887_010 Hb_135887_010 Hb_005991_030--Hb_135887_010 Hb_005228_050 Hb_005228_050 Hb_005991_030--Hb_005228_050 Hb_002960_180 Hb_002960_180 Hb_005991_030--Hb_002960_180 Hb_000724_040 Hb_000724_040 Hb_005991_030--Hb_000724_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186003 0 0.0656875 0.819538 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.40315

CAGE analysis