Hb_031527_010

Information

Type -
Description -
Location Contig31527: 6935-8743
Sequence    

Annotation

kegg
ID rcu:RCOM_0112060
description hypothetical protein
nr
ID XP_002528503.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID B9SR84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0112060 PE=4 SV=1
Gene Ontology
ID GO:0015630
description protein tpx2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33247: 6926-7242 , PASA_asmbl_33248: 8009-8235 , PASA_asmbl_33249: 8249-8721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002311_020 0.0987951683 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
3 Hb_000805_060 0.1035245745 - - laccase, putative [Ricinus communis]
4 Hb_001014_180 0.1037920719 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
5 Hb_010488_050 0.1060121467 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
6 Hb_112765_010 0.1079026874 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004920_150 0.1093309181 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003972_070 0.1099846417 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
9 Hb_034507_030 0.1129236459 - - PREDICTED: laccase-4-like [Jatropha curcas]
10 Hb_002739_140 0.1140444226 - - PREDICTED: protein TPX2 [Jatropha curcas]
11 Hb_078038_010 0.1146259261 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
12 Hb_005162_050 0.1148439627 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
13 Hb_002105_060 0.115040703 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
14 Hb_000272_080 0.1151690649 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
15 Hb_007674_020 0.1154874453 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
16 Hb_000917_040 0.1157414441 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
17 Hb_000107_020 0.1168034944 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
18 Hb_000307_020 0.1169197047 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
19 Hb_010098_030 0.1175066283 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004117_230 0.1177086787 - - lipid transfer precursor protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_031527_010 Hb_031527_010 Hb_002311_020 Hb_002311_020 Hb_031527_010--Hb_002311_020 Hb_000805_060 Hb_000805_060 Hb_031527_010--Hb_000805_060 Hb_001014_180 Hb_001014_180 Hb_031527_010--Hb_001014_180 Hb_010488_050 Hb_010488_050 Hb_031527_010--Hb_010488_050 Hb_112765_010 Hb_112765_010 Hb_031527_010--Hb_112765_010 Hb_004920_150 Hb_004920_150 Hb_031527_010--Hb_004920_150 Hb_003906_080 Hb_003906_080 Hb_002311_020--Hb_003906_080 Hb_004994_230 Hb_004994_230 Hb_002311_020--Hb_004994_230 Hb_002311_020--Hb_000805_060 Hb_006351_090 Hb_006351_090 Hb_002311_020--Hb_006351_090 Hb_034507_030 Hb_034507_030 Hb_002311_020--Hb_034507_030 Hb_000090_010 Hb_000090_010 Hb_002311_020--Hb_000090_010 Hb_008705_080 Hb_008705_080 Hb_000805_060--Hb_008705_080 Hb_000805_060--Hb_034507_030 Hb_000805_060--Hb_004994_230 Hb_007281_010 Hb_007281_010 Hb_000805_060--Hb_007281_010 Hb_000805_060--Hb_001014_180 Hb_001014_180--Hb_007281_010 Hb_001014_180--Hb_034507_030 Hb_003972_070 Hb_003972_070 Hb_001014_180--Hb_003972_070 Hb_004117_230 Hb_004117_230 Hb_001014_180--Hb_004117_230 Hb_000462_040 Hb_000462_040 Hb_001014_180--Hb_000462_040 Hb_002311_010 Hb_002311_010 Hb_001014_180--Hb_002311_010 Hb_002739_140 Hb_002739_140 Hb_010488_050--Hb_002739_140 Hb_010488_050--Hb_004920_150 Hb_050514_030 Hb_050514_030 Hb_010488_050--Hb_050514_030 Hb_010488_050--Hb_112765_010 Hb_000162_010 Hb_000162_010 Hb_010488_050--Hb_000162_010 Hb_010488_050--Hb_003972_070 Hb_000111_060 Hb_000111_060 Hb_112765_010--Hb_000111_060 Hb_143373_010 Hb_143373_010 Hb_112765_010--Hb_143373_010 Hb_004713_040 Hb_004713_040 Hb_112765_010--Hb_004713_040 Hb_000107_020 Hb_000107_020 Hb_112765_010--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_112765_010--Hb_007674_020 Hb_004920_150--Hb_002739_140 Hb_004920_150--Hb_004117_230 Hb_004920_150--Hb_003972_070 Hb_038927_020 Hb_038927_020 Hb_004920_150--Hb_038927_020 Hb_000776_090 Hb_000776_090 Hb_004920_150--Hb_000776_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.426709 0.4951 0.592648 47.1414 0.0797994 0.710685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13043 0.0512801 0 0.0829519 49.02

CAGE analysis