Hb_002965_110

Information

Type -
Description -
Location Contig2965: 71513-73059
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15040g
description hypothetical protein
nr
ID XP_006378529.1
description hypothetical protein POPTR_0010s15040g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G252
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15040g PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein far1-related sequence 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_110 0.0 - - hypothetical protein POPTR_0010s15040g [Populus trichocarpa]
2 Hb_000664_100 0.1545295701 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
3 Hb_004713_040 0.1618544704 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
4 Hb_025213_020 0.1635828314 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
5 Hb_000806_010 0.1749802654 - - PREDICTED: hevamine-A-like [Jatropha curcas]
6 Hb_060783_010 0.1757698233 - - Chloride channel protein CLC-c [Populus trichocarpa]
7 Hb_001520_030 0.1789958843 transcription factor TF Family: MYB PREDICTED: trichome differentiation protein GL1-like isoform X2 [Populus euphratica]
8 Hb_036790_050 0.1817770683 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
9 Hb_002559_020 0.1818849485 transcription factor TF Family: TUB -
10 Hb_005207_040 0.185543165 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
11 Hb_014102_010 0.186072896 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_000805_050 0.188995056 - - zinc transporter, putative [Ricinus communis]
13 Hb_000137_120 0.1911532977 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
14 Hb_143373_010 0.1915494281 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
15 Hb_002311_420 0.1917309318 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
16 Hb_003688_120 0.1919537991 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
17 Hb_000959_110 0.1924238613 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
18 Hb_001080_240 0.1931147813 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
19 Hb_000107_020 0.1932266339 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
20 Hb_007674_020 0.1947079558 - - PREDICTED: serpin-ZX-like [Jatropha curcas]

Gene co-expression network

sample Hb_002965_110 Hb_002965_110 Hb_000664_100 Hb_000664_100 Hb_002965_110--Hb_000664_100 Hb_004713_040 Hb_004713_040 Hb_002965_110--Hb_004713_040 Hb_025213_020 Hb_025213_020 Hb_002965_110--Hb_025213_020 Hb_000806_010 Hb_000806_010 Hb_002965_110--Hb_000806_010 Hb_060783_010 Hb_060783_010 Hb_002965_110--Hb_060783_010 Hb_001520_030 Hb_001520_030 Hb_002965_110--Hb_001520_030 Hb_031527_010 Hb_031527_010 Hb_000664_100--Hb_031527_010 Hb_000664_100--Hb_001520_030 Hb_010488_050 Hb_010488_050 Hb_000664_100--Hb_010488_050 Hb_012002_010 Hb_012002_010 Hb_000664_100--Hb_012002_010 Hb_002739_140 Hb_002739_140 Hb_000664_100--Hb_002739_140 Hb_112765_010 Hb_112765_010 Hb_004713_040--Hb_112765_010 Hb_143373_010 Hb_143373_010 Hb_004713_040--Hb_143373_010 Hb_000137_120 Hb_000137_120 Hb_004713_040--Hb_000137_120 Hb_002311_420 Hb_002311_420 Hb_004713_040--Hb_002311_420 Hb_000107_020 Hb_000107_020 Hb_004713_040--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_004713_040--Hb_007674_020 Hb_025213_020--Hb_000664_100 Hb_025213_020--Hb_001520_030 Hb_004586_410 Hb_004586_410 Hb_025213_020--Hb_004586_410 Hb_000805_050 Hb_000805_050 Hb_025213_020--Hb_000805_050 Hb_036790_050 Hb_036790_050 Hb_025213_020--Hb_036790_050 Hb_014102_010 Hb_014102_010 Hb_000806_010--Hb_014102_010 Hb_003688_120 Hb_003688_120 Hb_000806_010--Hb_003688_120 Hb_000649_090 Hb_000649_090 Hb_000806_010--Hb_000649_090 Hb_005207_040 Hb_005207_040 Hb_000806_010--Hb_005207_040 Hb_008714_030 Hb_008714_030 Hb_000806_010--Hb_008714_030 Hb_051410_010 Hb_051410_010 Hb_000806_010--Hb_051410_010 Hb_060783_010--Hb_036790_050 Hb_002559_020 Hb_002559_020 Hb_060783_010--Hb_002559_020 Hb_060783_010--Hb_005207_040 Hb_001144_030 Hb_001144_030 Hb_060783_010--Hb_001144_030 Hb_060783_010--Hb_003688_120 Hb_060783_010--Hb_014102_010 Hb_002925_060 Hb_002925_060 Hb_001520_030--Hb_002925_060 Hb_000959_110 Hb_000959_110 Hb_001520_030--Hb_000959_110 Hb_000193_320 Hb_000193_320 Hb_001520_030--Hb_000193_320 Hb_000377_130 Hb_000377_130 Hb_001520_030--Hb_000377_130 Hb_000334_030 Hb_000334_030 Hb_001520_030--Hb_000334_030 Hb_001712_030 Hb_001712_030 Hb_001520_030--Hb_001712_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0571456 0 0 0.731597 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0436813 0.589675

CAGE analysis