Hb_025213_020

Information

Type -
Description -
Location Contig25213: 27956-30092
Sequence    

Annotation

kegg
ID cit:102626291
description (R)-mandelonitrile lyase-like
nr
ID XP_011033018.1
description PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
swissprot
ID Q9SSM2
description (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1
trembl
ID A0A067K652
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19833 PE=3 SV=1
Gene Ontology
ID GO:0016614
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26391: 30018-30184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025213_020 0.0 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
2 Hb_002965_110 0.1635828314 - - hypothetical protein POPTR_0010s15040g [Populus trichocarpa]
3 Hb_000664_100 0.2110516006 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
4 Hb_001520_030 0.2390811332 transcription factor TF Family: MYB PREDICTED: trichome differentiation protein GL1-like isoform X2 [Populus euphratica]
5 Hb_004586_410 0.240744887 - - ring finger protein, putative [Ricinus communis]
6 Hb_000805_050 0.2434936458 - - zinc transporter, putative [Ricinus communis]
7 Hb_036790_050 0.2518678527 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_060783_010 0.2526441927 - - Chloride channel protein CLC-c [Populus trichocarpa]
9 Hb_000815_220 0.2542836268 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000173_140 0.254987802 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
11 Hb_004713_040 0.2556086649 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
12 Hb_002559_020 0.2610153958 transcription factor TF Family: TUB -
13 Hb_001080_240 0.2624125105 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
14 Hb_003913_010 0.2650298471 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005056_040 0.265543771 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
16 Hb_001214_040 0.2657569059 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
17 Hb_025311_010 0.2674866611 - - -
18 Hb_020178_030 0.2674897893 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005375_080 0.2675038822 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
20 Hb_000500_250 0.2675065158 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]

Gene co-expression network

sample Hb_025213_020 Hb_025213_020 Hb_002965_110 Hb_002965_110 Hb_025213_020--Hb_002965_110 Hb_000664_100 Hb_000664_100 Hb_025213_020--Hb_000664_100 Hb_001520_030 Hb_001520_030 Hb_025213_020--Hb_001520_030 Hb_004586_410 Hb_004586_410 Hb_025213_020--Hb_004586_410 Hb_000805_050 Hb_000805_050 Hb_025213_020--Hb_000805_050 Hb_036790_050 Hb_036790_050 Hb_025213_020--Hb_036790_050 Hb_002965_110--Hb_000664_100 Hb_004713_040 Hb_004713_040 Hb_002965_110--Hb_004713_040 Hb_000806_010 Hb_000806_010 Hb_002965_110--Hb_000806_010 Hb_060783_010 Hb_060783_010 Hb_002965_110--Hb_060783_010 Hb_002965_110--Hb_001520_030 Hb_031527_010 Hb_031527_010 Hb_000664_100--Hb_031527_010 Hb_000664_100--Hb_001520_030 Hb_010488_050 Hb_010488_050 Hb_000664_100--Hb_010488_050 Hb_012002_010 Hb_012002_010 Hb_000664_100--Hb_012002_010 Hb_002739_140 Hb_002739_140 Hb_000664_100--Hb_002739_140 Hb_002925_060 Hb_002925_060 Hb_001520_030--Hb_002925_060 Hb_000959_110 Hb_000959_110 Hb_001520_030--Hb_000959_110 Hb_000193_320 Hb_000193_320 Hb_001520_030--Hb_000193_320 Hb_000377_130 Hb_000377_130 Hb_001520_030--Hb_000377_130 Hb_000334_030 Hb_000334_030 Hb_001520_030--Hb_000334_030 Hb_001712_030 Hb_001712_030 Hb_001520_030--Hb_001712_030 Hb_004657_070 Hb_004657_070 Hb_004586_410--Hb_004657_070 Hb_000428_040 Hb_000428_040 Hb_004586_410--Hb_000428_040 Hb_005183_130 Hb_005183_130 Hb_004586_410--Hb_005183_130 Hb_000236_230 Hb_000236_230 Hb_004586_410--Hb_000236_230 Hb_017434_080 Hb_017434_080 Hb_004586_410--Hb_017434_080 Hb_000482_080 Hb_000482_080 Hb_004586_410--Hb_000482_080 Hb_006634_120 Hb_006634_120 Hb_000805_050--Hb_006634_120 Hb_000037_150 Hb_000037_150 Hb_000805_050--Hb_000037_150 Hb_005056_040 Hb_005056_040 Hb_000805_050--Hb_005056_040 Hb_064445_040 Hb_064445_040 Hb_000805_050--Hb_064445_040 Hb_001477_050 Hb_001477_050 Hb_000805_050--Hb_001477_050 Hb_024074_030 Hb_024074_030 Hb_000805_050--Hb_024074_030 Hb_036790_050--Hb_060783_010 Hb_002559_020 Hb_002559_020 Hb_036790_050--Hb_002559_020 Hb_001144_030 Hb_001144_030 Hb_036790_050--Hb_001144_030 Hb_005207_040 Hb_005207_040 Hb_036790_050--Hb_005207_040 Hb_188281_020 Hb_188281_020 Hb_036790_050--Hb_188281_020 Hb_105885_010 Hb_105885_010 Hb_036790_050--Hb_105885_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0491151 0 0 0.370374 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0279472 0 0 0.0175314 0.230882

CAGE analysis