Hb_001520_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig1520: 56122-57148
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04140g
description POPTRDRAFT_654648; hypothetical protein
nr
ID XP_011031188.1
description PREDICTED: trichome differentiation protein GL1-like isoform X2 [Populus euphratica]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9HER9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04140g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcriptional activator myb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001520_030 0.0 transcription factor TF Family: MYB PREDICTED: trichome differentiation protein GL1-like isoform X2 [Populus euphratica]
2 Hb_002925_060 0.1360779288 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
3 Hb_000959_110 0.1420682863 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
4 Hb_000193_320 0.143116591 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000377_130 0.1444651213 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
6 Hb_000334_030 0.1448125389 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001712_030 0.15008495 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
8 Hb_001500_090 0.1543223054 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009476_080 0.1555341703 - - BnaA03g18920D [Brassica napus]
10 Hb_031284_060 0.1567693931 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
11 Hb_004930_020 0.1576682336 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
12 Hb_000080_100 0.1577102903 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
13 Hb_047612_010 0.1593467209 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
14 Hb_002078_180 0.1600817586 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
15 Hb_006755_030 0.1602919647 - - BURP domain-containing protein, putative [Theobroma cacao]
16 Hb_000173_240 0.1603001801 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000620_050 0.1612754194 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
18 Hb_000311_100 0.1615173038 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000813_070 0.1619863402 - - conserved hypothetical protein [Ricinus communis]
20 Hb_015807_090 0.1628330402 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001520_030 Hb_001520_030 Hb_002925_060 Hb_002925_060 Hb_001520_030--Hb_002925_060 Hb_000959_110 Hb_000959_110 Hb_001520_030--Hb_000959_110 Hb_000193_320 Hb_000193_320 Hb_001520_030--Hb_000193_320 Hb_000377_130 Hb_000377_130 Hb_001520_030--Hb_000377_130 Hb_000334_030 Hb_000334_030 Hb_001520_030--Hb_000334_030 Hb_001712_030 Hb_001712_030 Hb_001520_030--Hb_001712_030 Hb_001408_200 Hb_001408_200 Hb_002925_060--Hb_001408_200 Hb_000620_050 Hb_000620_050 Hb_002925_060--Hb_000620_050 Hb_182869_010 Hb_182869_010 Hb_002925_060--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_002925_060--Hb_003058_240 Hb_047612_010 Hb_047612_010 Hb_002925_060--Hb_047612_010 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060 Hb_006755_030 Hb_006755_030 Hb_000959_110--Hb_006755_030 Hb_004930_020 Hb_004930_020 Hb_000959_110--Hb_004930_020 Hb_184074_010 Hb_184074_010 Hb_000959_110--Hb_184074_010 Hb_000959_110--Hb_000334_030 Hb_000959_110--Hb_000377_130 Hb_186765_010 Hb_186765_010 Hb_000959_110--Hb_186765_010 Hb_002078_180 Hb_002078_180 Hb_000193_320--Hb_002078_180 Hb_001500_090 Hb_001500_090 Hb_000193_320--Hb_001500_090 Hb_000776_090 Hb_000776_090 Hb_000193_320--Hb_000776_090 Hb_009476_080 Hb_009476_080 Hb_000193_320--Hb_009476_080 Hb_000086_490 Hb_000086_490 Hb_000193_320--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_000193_320--Hb_015807_090 Hb_000377_130--Hb_006755_030 Hb_011519_040 Hb_011519_040 Hb_000377_130--Hb_011519_040 Hb_000377_130--Hb_186765_010 Hb_000377_130--Hb_002925_060 Hb_000377_130--Hb_000620_050 Hb_000334_030--Hb_004930_020 Hb_000334_030--Hb_184074_010 Hb_000334_030--Hb_001500_090 Hb_002750_030 Hb_002750_030 Hb_000334_030--Hb_002750_030 Hb_000334_030--Hb_000193_320 Hb_000462_040 Hb_000462_040 Hb_001712_030--Hb_000462_040 Hb_038927_020 Hb_038927_020 Hb_001712_030--Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_001712_030--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_001712_030--Hb_007281_010 Hb_000311_100 Hb_000311_100 Hb_001712_030--Hb_000311_100 Hb_000165_260 Hb_000165_260 Hb_001712_030--Hb_000165_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0337227 0.0341933 0.0254799 0.476639 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0248598 0.364197

CAGE analysis