Hb_000088_140

Information

Type -
Description -
Location Contig88: 192202-194739
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_140 0.0 - - -
2 Hb_001557_010 0.1054150885 - - PREDICTED: extensin [Jatropha curcas]
3 Hb_000139_060 0.1096437389 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
4 Hb_136408_040 0.1419503523 - - PREDICTED: protein NDR1 [Jatropha curcas]
5 Hb_001257_050 0.1459843721 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
6 Hb_005183_050 0.1487884704 - - hypothetical protein RCOM_1590900 [Ricinus communis]
7 Hb_000008_070 0.1492041668 - - kinase, putative [Ricinus communis]
8 Hb_001541_200 0.1514086955 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
9 Hb_008226_010 0.1524837864 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
10 Hb_002338_040 0.1532808808 - - conserved hypothetical protein [Ricinus communis]
11 Hb_022092_070 0.1540557543 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
12 Hb_001474_060 0.1543130172 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
13 Hb_026549_060 0.1546601639 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_001657_020 0.1552535962 - - heat shock family protein [Populus trichocarpa]
15 Hb_001433_090 0.1566655133 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
16 Hb_002259_130 0.1588653915 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_005000_150 0.159188095 - - conserved hypothetical protein [Ricinus communis]
18 Hb_095744_010 0.1601018809 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
19 Hb_001512_130 0.1607132538 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
20 Hb_015807_130 0.1615243381 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_140 Hb_000088_140 Hb_001557_010 Hb_001557_010 Hb_000088_140--Hb_001557_010 Hb_000139_060 Hb_000139_060 Hb_000088_140--Hb_000139_060 Hb_136408_040 Hb_136408_040 Hb_000088_140--Hb_136408_040 Hb_001257_050 Hb_001257_050 Hb_000088_140--Hb_001257_050 Hb_005183_050 Hb_005183_050 Hb_000088_140--Hb_005183_050 Hb_000008_070 Hb_000008_070 Hb_000088_140--Hb_000008_070 Hb_001557_010--Hb_005183_050 Hb_026549_060 Hb_026549_060 Hb_001557_010--Hb_026549_060 Hb_001433_090 Hb_001433_090 Hb_001557_010--Hb_001433_090 Hb_005000_150 Hb_005000_150 Hb_001557_010--Hb_005000_150 Hb_001541_200 Hb_001541_200 Hb_001557_010--Hb_001541_200 Hb_000749_300 Hb_000749_300 Hb_001557_010--Hb_000749_300 Hb_008226_010 Hb_008226_010 Hb_000139_060--Hb_008226_010 Hb_000139_060--Hb_001541_200 Hb_000139_060--Hb_001557_010 Hb_005066_040 Hb_005066_040 Hb_000139_060--Hb_005066_040 Hb_000139_060--Hb_000008_070 Hb_001657_020 Hb_001657_020 Hb_000139_060--Hb_001657_020 Hb_003152_020 Hb_003152_020 Hb_136408_040--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_136408_040--Hb_007163_110 Hb_002062_010 Hb_002062_010 Hb_136408_040--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_136408_040--Hb_001512_130 Hb_000017_180 Hb_000017_180 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_001257_050--Hb_000008_070 Hb_003929_240 Hb_003929_240 Hb_001257_050--Hb_003929_240 Hb_001474_060 Hb_001474_060 Hb_001257_050--Hb_001474_060 Hb_001257_050--Hb_000139_060 Hb_000005_370 Hb_000005_370 Hb_001257_050--Hb_000005_370 Hb_001257_050--Hb_001541_200 Hb_005183_050--Hb_001433_090 Hb_005183_050--Hb_000017_180 Hb_000002_110 Hb_000002_110 Hb_005183_050--Hb_000002_110 Hb_005183_050--Hb_003152_020 Hb_005183_050--Hb_026549_060 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_000008_070--Hb_001474_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.687448 2.44283 7.95121 0.416222 0.827385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.246414 10.5518

CAGE analysis