Hb_000690_170

Information

Type -
Description -
Location Contig690: 250439-250663
Sequence    

Annotation

kegg
ID rcu:RCOM_1316810
description hypothetical protein
nr
ID XP_002518997.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZ28
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1316810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54314: 244416-250765
cDNA
(Sanger)
(ID:Location)		 022_H19.ab1: 244720-250688

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000061_290 0.1657923812 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000088_140 0.2116607255 - - -
4 Hb_012633_060 0.2199340103 - - laccase, putative [Ricinus communis]
5 Hb_008226_010 0.227062582 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
6 Hb_001276_050 0.2279880203 desease resistance Gene Name: NB-ARC NBS-LRR resistance-like protein 1O [Medicago truncatula]
7 Hb_001832_170 0.2324354836 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
8 Hb_063718_010 0.2330842817 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000270_340 0.2338145647 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
10 Hb_000684_400 0.2355876429 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
11 Hb_000616_030 0.2362438015 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
12 Hb_000139_060 0.2362586571 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
13 Hb_000417_220 0.2400419978 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
14 Hb_015234_010 0.2412548706 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
15 Hb_002338_040 0.2422433774 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001474_060 0.2425688104 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
17 Hb_010174_100 0.2441331147 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
18 Hb_000439_020 0.247528002 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
19 Hb_000005_370 0.2483967697 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
20 Hb_001124_230 0.2504125401 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000690_170 Hb_000690_170 Hb_000061_290 Hb_000061_290 Hb_000690_170--Hb_000061_290 Hb_000088_140 Hb_000088_140 Hb_000690_170--Hb_000088_140 Hb_012633_060 Hb_012633_060 Hb_000690_170--Hb_012633_060 Hb_008226_010 Hb_008226_010 Hb_000690_170--Hb_008226_010 Hb_001276_050 Hb_001276_050 Hb_000690_170--Hb_001276_050 Hb_001832_170 Hb_001832_170 Hb_000690_170--Hb_001832_170 Hb_000417_220 Hb_000417_220 Hb_000061_290--Hb_000417_220 Hb_000061_290--Hb_012633_060 Hb_003913_010 Hb_003913_010 Hb_000061_290--Hb_003913_010 Hb_000061_290--Hb_001276_050 Hb_000270_340 Hb_000270_340 Hb_000061_290--Hb_000270_340 Hb_001557_010 Hb_001557_010 Hb_000088_140--Hb_001557_010 Hb_000139_060 Hb_000139_060 Hb_000088_140--Hb_000139_060 Hb_136408_040 Hb_136408_040 Hb_000088_140--Hb_136408_040 Hb_001257_050 Hb_001257_050 Hb_000088_140--Hb_001257_050 Hb_005183_050 Hb_005183_050 Hb_000088_140--Hb_005183_050 Hb_000008_070 Hb_000008_070 Hb_000088_140--Hb_000008_070 Hb_000200_360 Hb_000200_360 Hb_012633_060--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_012633_060--Hb_001959_100 Hb_012633_060--Hb_000270_340 Hb_000227_100 Hb_000227_100 Hb_012633_060--Hb_000227_100 Hb_000340_240 Hb_000340_240 Hb_012633_060--Hb_000340_240 Hb_000538_110 Hb_000538_110 Hb_012633_060--Hb_000538_110 Hb_000134_080 Hb_000134_080 Hb_008226_010--Hb_000134_080 Hb_008226_010--Hb_000139_060 Hb_015234_010 Hb_015234_010 Hb_008226_010--Hb_015234_010 Hb_002338_040 Hb_002338_040 Hb_008226_010--Hb_002338_040 Hb_000260_520 Hb_000260_520 Hb_008226_010--Hb_000260_520 Hb_005066_040 Hb_005066_040 Hb_008226_010--Hb_005066_040 Hb_001276_050--Hb_015234_010 Hb_001276_050--Hb_008226_010 Hb_001276_050--Hb_000270_340 Hb_008695_060 Hb_008695_060 Hb_001276_050--Hb_008695_060 Hb_003038_070 Hb_003038_070 Hb_001276_050--Hb_003038_070 Hb_001097_030 Hb_001097_030 Hb_001276_050--Hb_001097_030 Hb_001832_170--Hb_000417_220 Hb_000005_370 Hb_000005_370 Hb_001832_170--Hb_000005_370 Hb_002400_300 Hb_002400_300 Hb_001832_170--Hb_002400_300 Hb_000552_010 Hb_000552_010 Hb_001832_170--Hb_000552_010 Hb_001832_170--Hb_000270_340 Hb_001832_170--Hb_000139_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64704 3.28119 36.6558 170.149 41.6295 36.2987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69823 0 11.8596 5.74983 349.669

CAGE analysis