Hb_116020_010

Information

Type -
Description -
Location Contig116020: 28-561
Sequence    

Annotation

kegg
ID tcc:TCM_023639
description hypothetical protein
nr
ID XP_007028160.1
description Uncharacterized protein TCM_023639 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID M1DSU3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043417 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116020_010 0.0 - - Uncharacterized protein TCM_023639 [Theobroma cacao]
2 Hb_020378_050 0.2298191793 - - -
3 Hb_000387_090 0.2662324894 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
4 Hb_000003_360 0.297181568 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
5 Hb_000935_020 0.3231446883 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
6 Hb_006649_070 0.3276340932 - - unknown [Lotus japonicus]
7 Hb_001623_600 0.3303731127 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
8 Hb_054865_140 0.3364781221 - - -
9 Hb_000402_100 0.3537846289 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
10 Hb_001818_110 0.367449192 - - -
11 Hb_000445_200 0.3693463782 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_001204_020 0.3697804008 - - Uncharacterized protein TCM_021965 [Theobroma cacao]
13 Hb_057207_010 0.3713044133 - - hypothetical protein F383_17010 [Gossypium arboreum]
14 Hb_050953_010 0.3718446021 - - PREDICTED: uncharacterized protein LOC105779031 [Gossypium raimondii]
15 Hb_001411_040 0.3726642247 - - hypothetical protein VITISV_010644 [Vitis vinifera]
16 Hb_126044_010 0.3782131779 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
17 Hb_006212_030 0.3836571777 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
18 Hb_007479_030 0.3879753872 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
19 Hb_032634_010 0.3888592001 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_004117_350 0.3920065929 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]

Gene co-expression network

sample Hb_116020_010 Hb_116020_010 Hb_020378_050 Hb_020378_050 Hb_116020_010--Hb_020378_050 Hb_000387_090 Hb_000387_090 Hb_116020_010--Hb_000387_090 Hb_000003_360 Hb_000003_360 Hb_116020_010--Hb_000003_360 Hb_000935_020 Hb_000935_020 Hb_116020_010--Hb_000935_020 Hb_006649_070 Hb_006649_070 Hb_116020_010--Hb_006649_070 Hb_001623_600 Hb_001623_600 Hb_116020_010--Hb_001623_600 Hb_158869_010 Hb_158869_010 Hb_020378_050--Hb_158869_010 Hb_020378_050--Hb_000003_360 Hb_000922_180 Hb_000922_180 Hb_020378_050--Hb_000922_180 Hb_002259_050 Hb_002259_050 Hb_020378_050--Hb_002259_050 Hb_057207_010 Hb_057207_010 Hb_020378_050--Hb_057207_010 Hb_007479_030 Hb_007479_030 Hb_000387_090--Hb_007479_030 Hb_000445_200 Hb_000445_200 Hb_000387_090--Hb_000445_200 Hb_001344_030 Hb_001344_030 Hb_000387_090--Hb_001344_030 Hb_013253_030 Hb_013253_030 Hb_000387_090--Hb_013253_030 Hb_033152_040 Hb_033152_040 Hb_000387_090--Hb_033152_040 Hb_000402_100 Hb_000402_100 Hb_000003_360--Hb_000402_100 Hb_000156_210 Hb_000156_210 Hb_000003_360--Hb_000156_210 Hb_000191_080 Hb_000191_080 Hb_000003_360--Hb_000191_080 Hb_001435_020 Hb_001435_020 Hb_000003_360--Hb_001435_020 Hb_101430_010 Hb_101430_010 Hb_000003_360--Hb_101430_010 Hb_000530_120 Hb_000530_120 Hb_000003_360--Hb_000530_120 Hb_002324_090 Hb_002324_090 Hb_000935_020--Hb_002324_090 Hb_003106_170 Hb_003106_170 Hb_000935_020--Hb_003106_170 Hb_000935_020--Hb_000387_090 Hb_001405_090 Hb_001405_090 Hb_000935_020--Hb_001405_090 Hb_004689_040 Hb_004689_040 Hb_000935_020--Hb_004689_040 Hb_002307_190 Hb_002307_190 Hb_000935_020--Hb_002307_190 Hb_004117_350 Hb_004117_350 Hb_006649_070--Hb_004117_350 Hb_018202_030 Hb_018202_030 Hb_006649_070--Hb_018202_030 Hb_012146_030 Hb_012146_030 Hb_006649_070--Hb_012146_030 Hb_006132_070 Hb_006132_070 Hb_006649_070--Hb_006132_070 Hb_029610_010 Hb_029610_010 Hb_006649_070--Hb_029610_010 Hb_006054_050 Hb_006054_050 Hb_006649_070--Hb_006054_050 Hb_001623_600--Hb_000445_200 Hb_001623_600--Hb_057207_010 Hb_001623_600--Hb_000387_090 Hb_104721_010 Hb_104721_010 Hb_001623_600--Hb_104721_010 Hb_003487_010 Hb_003487_010 Hb_001623_600--Hb_003487_010 Hb_002874_040 Hb_002874_040 Hb_001623_600--Hb_002874_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132002 0 0.0422626 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120719 0.0948509 0 0 0.179786

CAGE analysis