Hb_000935_020

Information

Type -
Description -
Location Contig935: 26341-27382
Sequence    

Annotation

kegg
ID brp:103828135
description putative ribonuclease H protein At1g65750
nr
ID AAD22368.1
description putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID Q9SJZ8
description Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_020 0.0 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
2 Hb_002324_090 0.2584654983 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_003106_170 0.278764633 - - Endonuclease III, putative [Ricinus communis]
4 Hb_000387_090 0.2820836149 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
5 Hb_001405_090 0.2856406189 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
6 Hb_004689_040 0.2899531357 - - PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
7 Hb_002307_190 0.2954856286 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
8 Hb_000445_200 0.2986643788 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_001133_100 0.3035092462 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
10 Hb_000608_330 0.3038622446 - - Zeamatin precursor, putative [Ricinus communis]
11 Hb_002071_030 0.3067988985 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
12 Hb_002762_030 0.307726364 - - hypothetical protein POPTR_0019s12370g, partial [Populus trichocarpa]
13 Hb_004545_010 0.3106593474 - - acyl carrier protein [Ricinus communis]
14 Hb_003752_060 0.3126443426 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
15 Hb_001411_040 0.3172692541 - - hypothetical protein VITISV_010644 [Vitis vinifera]
16 Hb_007694_060 0.3203370114 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
17 Hb_001300_130 0.3206140418 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
18 Hb_001969_100 0.321336737 - - signal transducer, putative [Ricinus communis]
19 Hb_007044_250 0.3214317005 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006916_080 0.3216063007 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]

Gene co-expression network

sample Hb_000935_020 Hb_000935_020 Hb_002324_090 Hb_002324_090 Hb_000935_020--Hb_002324_090 Hb_003106_170 Hb_003106_170 Hb_000935_020--Hb_003106_170 Hb_000387_090 Hb_000387_090 Hb_000935_020--Hb_000387_090 Hb_001405_090 Hb_001405_090 Hb_000935_020--Hb_001405_090 Hb_004689_040 Hb_004689_040 Hb_000935_020--Hb_004689_040 Hb_002307_190 Hb_002307_190 Hb_000935_020--Hb_002307_190 Hb_002324_090--Hb_001405_090 Hb_000442_070 Hb_000442_070 Hb_002324_090--Hb_000442_070 Hb_000302_230 Hb_000302_230 Hb_002324_090--Hb_000302_230 Hb_004459_060 Hb_004459_060 Hb_002324_090--Hb_004459_060 Hb_000393_040 Hb_000393_040 Hb_002324_090--Hb_000393_040 Hb_006620_070 Hb_006620_070 Hb_002324_090--Hb_006620_070 Hb_000977_270 Hb_000977_270 Hb_003106_170--Hb_000977_270 Hb_007044_250 Hb_007044_250 Hb_003106_170--Hb_007044_250 Hb_001484_080 Hb_001484_080 Hb_003106_170--Hb_001484_080 Hb_000062_520 Hb_000062_520 Hb_003106_170--Hb_000062_520 Hb_002304_180 Hb_002304_180 Hb_003106_170--Hb_002304_180 Hb_000667_140 Hb_000667_140 Hb_003106_170--Hb_000667_140 Hb_007479_030 Hb_007479_030 Hb_000387_090--Hb_007479_030 Hb_000445_200 Hb_000445_200 Hb_000387_090--Hb_000445_200 Hb_001344_030 Hb_001344_030 Hb_000387_090--Hb_001344_030 Hb_116020_010 Hb_116020_010 Hb_000387_090--Hb_116020_010 Hb_013253_030 Hb_013253_030 Hb_000387_090--Hb_013253_030 Hb_033152_040 Hb_033152_040 Hb_000387_090--Hb_033152_040 Hb_001405_090--Hb_006620_070 Hb_001405_090--Hb_004459_060 Hb_001405_090--Hb_000442_070 Hb_007694_060 Hb_007694_060 Hb_001405_090--Hb_007694_060 Hb_011114_020 Hb_011114_020 Hb_001405_090--Hb_011114_020 Hb_000206_170 Hb_000206_170 Hb_001405_090--Hb_000206_170 Hb_017895_060 Hb_017895_060 Hb_004689_040--Hb_017895_060 Hb_000991_020 Hb_000991_020 Hb_004689_040--Hb_000991_020 Hb_004689_040--Hb_001405_090 Hb_019837_040 Hb_019837_040 Hb_004689_040--Hb_019837_040 Hb_169209_010 Hb_169209_010 Hb_004689_040--Hb_169209_010 Hb_009178_070 Hb_009178_070 Hb_004689_040--Hb_009178_070 Hb_002307_190--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_002307_190--Hb_000174_080 Hb_137216_010 Hb_137216_010 Hb_002307_190--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_002307_190--Hb_002071_030 Hb_003905_020 Hb_003905_020 Hb_002307_190--Hb_003905_020 Hb_006916_080 Hb_006916_080 Hb_002307_190--Hb_006916_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140137 0 0.216846 0.0346103 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.080905 0.0636026 0 0 0.503166

CAGE analysis