Hb_000017_130

Information

Type -
Description -
Location Contig17: 180181-185082
Sequence    

Annotation

kegg
ID rcu:RCOM_1688090
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_012086832.1
description PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
swissprot
ID Q40353
description Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1
trembl
ID A0A067JN25
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_20547 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog mmk2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15825: 180165-185448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_130 0.0 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
2 Hb_114861_010 0.1934982195 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
3 Hb_000110_230 0.1957293973 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
4 Hb_002304_180 0.1964336029 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
5 Hb_000012_010 0.2004892054 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
6 Hb_000189_520 0.2013384344 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
7 Hb_001484_080 0.2050603806 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
8 Hb_009620_060 0.2079173432 - - PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Jatropha curcas]
9 Hb_007044_250 0.2141816654 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004689_040 0.215525247 - - PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
11 Hb_000977_270 0.2184561418 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
12 Hb_000473_060 0.2186033865 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
13 Hb_001792_030 0.2192596824 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
14 Hb_000395_010 0.2217276394 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
15 Hb_003106_170 0.2245369334 - - Endonuclease III, putative [Ricinus communis]
16 Hb_004545_010 0.2248623612 - - acyl carrier protein [Ricinus communis]
17 Hb_000866_050 0.2301603506 - - phosphate transporter [Manihot esculenta]
18 Hb_005563_040 0.2317782647 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
19 Hb_000210_080 0.2336708823 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
20 Hb_000062_520 0.2337958459 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000017_130 Hb_000017_130 Hb_114861_010 Hb_114861_010 Hb_000017_130--Hb_114861_010 Hb_000110_230 Hb_000110_230 Hb_000017_130--Hb_000110_230 Hb_002304_180 Hb_002304_180 Hb_000017_130--Hb_002304_180 Hb_000012_010 Hb_000012_010 Hb_000017_130--Hb_000012_010 Hb_000189_520 Hb_000189_520 Hb_000017_130--Hb_000189_520 Hb_001484_080 Hb_001484_080 Hb_000017_130--Hb_001484_080 Hb_114861_010--Hb_001484_080 Hb_001792_030 Hb_001792_030 Hb_114861_010--Hb_001792_030 Hb_007044_250 Hb_007044_250 Hb_114861_010--Hb_007044_250 Hb_114861_010--Hb_000189_520 Hb_005489_090 Hb_005489_090 Hb_114861_010--Hb_005489_090 Hb_114861_010--Hb_000110_230 Hb_000164_140 Hb_000164_140 Hb_000110_230--Hb_000164_140 Hb_005725_220 Hb_005725_220 Hb_000110_230--Hb_005725_220 Hb_029920_030 Hb_029920_030 Hb_000110_230--Hb_029920_030 Hb_000042_290 Hb_000042_290 Hb_000110_230--Hb_000042_290 Hb_005276_010 Hb_005276_010 Hb_000110_230--Hb_005276_010 Hb_036790_120 Hb_036790_120 Hb_000110_230--Hb_036790_120 Hb_003494_030 Hb_003494_030 Hb_002304_180--Hb_003494_030 Hb_000667_140 Hb_000667_140 Hb_002304_180--Hb_000667_140 Hb_000977_270 Hb_000977_270 Hb_002304_180--Hb_000977_270 Hb_000023_210 Hb_000023_210 Hb_002304_180--Hb_000023_210 Hb_002304_180--Hb_007044_250 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_000012_010--Hb_002304_180 Hb_011053_020 Hb_011053_020 Hb_000012_010--Hb_011053_020 Hb_000012_010--Hb_000189_520 Hb_000012_010--Hb_000023_210 Hb_000012_010--Hb_000667_140 Hb_000866_050 Hb_000866_050 Hb_000012_010--Hb_000866_050 Hb_000189_520--Hb_001792_030 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_001484_080--Hb_007044_250 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0400247 0.0400707 1.85568 1.02293 0.0375077 0.146935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83094 0.32403 0.6661 0.43354 5.25876

CAGE analysis