Hb_001728_120

Information

Type -
Description -
Location Contig1728: 138026-138952
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15540g
description hypothetical protein
nr
ID XP_006368996.1
description hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GPV4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s15540g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16396: 139430-141708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_120 0.0 - - hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
2 Hb_001300_250 0.1161801601 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
3 Hb_003164_010 0.1784426266 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_002045_080 0.2074621503 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
5 Hb_003073_090 0.2230264732 transcription factor TF Family: B3 hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
6 Hb_000834_070 0.2299005902 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
7 Hb_001587_170 0.2500605489 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
8 Hb_001488_190 0.2520491408 - - alpha-amylase, putative [Ricinus communis]
9 Hb_003197_010 0.2562156072 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000454_040 0.2755739202 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
11 Hb_002173_050 0.2801836335 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_001310_090 0.2875342263 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
13 Hb_002073_110 0.2899931 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002534_010 0.2928519743 - - PREDICTED: expansin-A1-like [Jatropha curcas]
15 Hb_001550_050 0.306814825 - - PREDICTED: J domain-containing protein spf31 [Eucalyptus grandis]
16 Hb_004102_010 0.3070896932 - - F-box family protein [Theobroma cacao]
17 Hb_059554_010 0.3075396325 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
18 Hb_017358_070 0.311423394 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_000367_250 0.3258322022 - - unnamed protein product [Vitis vinifera]
20 Hb_041813_080 0.3278626769 - - -

Gene co-expression network

sample Hb_001728_120 Hb_001728_120 Hb_001300_250 Hb_001300_250 Hb_001728_120--Hb_001300_250 Hb_003164_010 Hb_003164_010 Hb_001728_120--Hb_003164_010 Hb_002045_080 Hb_002045_080 Hb_001728_120--Hb_002045_080 Hb_003073_090 Hb_003073_090 Hb_001728_120--Hb_003073_090 Hb_000834_070 Hb_000834_070 Hb_001728_120--Hb_000834_070 Hb_001587_170 Hb_001587_170 Hb_001728_120--Hb_001587_170 Hb_001300_250--Hb_003073_090 Hb_001300_250--Hb_000834_070 Hb_002073_110 Hb_002073_110 Hb_001300_250--Hb_002073_110 Hb_003197_010 Hb_003197_010 Hb_001300_250--Hb_003197_010 Hb_001300_250--Hb_003164_010 Hb_003164_010--Hb_001587_170 Hb_000367_250 Hb_000367_250 Hb_003164_010--Hb_000367_250 Hb_004007_140 Hb_004007_140 Hb_003164_010--Hb_004007_140 Hb_003164_010--Hb_002045_080 Hb_000856_270 Hb_000856_270 Hb_003164_010--Hb_000856_270 Hb_059554_010 Hb_059554_010 Hb_002045_080--Hb_059554_010 Hb_001488_190 Hb_001488_190 Hb_002045_080--Hb_001488_190 Hb_002173_050 Hb_002173_050 Hb_002045_080--Hb_002173_050 Hb_012090_030 Hb_012090_030 Hb_002045_080--Hb_012090_030 Hb_000001_100 Hb_000001_100 Hb_003073_090--Hb_000001_100 Hb_005687_080 Hb_005687_080 Hb_003073_090--Hb_005687_080 Hb_003073_090--Hb_002173_050 Hb_041813_080 Hb_041813_080 Hb_003073_090--Hb_041813_080 Hb_007558_130 Hb_007558_130 Hb_000834_070--Hb_007558_130 Hb_000834_070--Hb_003197_010 Hb_004102_010 Hb_004102_010 Hb_000834_070--Hb_004102_010 Hb_000834_070--Hb_002073_110 Hb_001587_170--Hb_000367_250 Hb_001587_170--Hb_001300_250 Hb_001959_090 Hb_001959_090 Hb_001587_170--Hb_001959_090 Hb_000454_040 Hb_000454_040 Hb_001587_170--Hb_000454_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0661026 0.0711556 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0908066 0 0.100806

CAGE analysis