Hb_001959_090

Information

Type -
Description -
Location Contig1959: 93075-96778
Sequence    

Annotation

kegg
ID vvi:100265559
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_012077690.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A067KED7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12907 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_090 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_000977_170 0.1762910048 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_004236_040 0.2056137253 - - biotin carboxyl carrier protein [Vernicia fordii]
4 Hb_058620_080 0.2098460876 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
5 Hb_001579_280 0.209913031 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
6 Hb_000130_330 0.2119220703 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
7 Hb_003786_080 0.2139890629 - - electron transporter, putative [Ricinus communis]
8 Hb_024399_020 0.2190833015 - - electron transporter, putative [Ricinus communis]
9 Hb_005488_160 0.2200574047 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
10 Hb_000062_480 0.2225145515 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
11 Hb_000803_170 0.2243418081 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
12 Hb_000019_080 0.2247459835 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
13 Hb_005563_040 0.2294889957 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
14 Hb_000089_140 0.2319180136 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
15 Hb_005779_020 0.2332183787 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005271_100 0.2332191612 - - unnamed protein product [Vitis vinifera]
17 Hb_000352_280 0.2353421078 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
18 Hb_000539_040 0.2356410903 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
19 Hb_005976_070 0.2357552275 - - triacylglycerol lipase, putative [Ricinus communis]
20 Hb_002411_100 0.239516943 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]

Gene co-expression network

sample Hb_001959_090 Hb_001959_090 Hb_000977_170 Hb_000977_170 Hb_001959_090--Hb_000977_170 Hb_004236_040 Hb_004236_040 Hb_001959_090--Hb_004236_040 Hb_058620_080 Hb_058620_080 Hb_001959_090--Hb_058620_080 Hb_001579_280 Hb_001579_280 Hb_001959_090--Hb_001579_280 Hb_000130_330 Hb_000130_330 Hb_001959_090--Hb_000130_330 Hb_003786_080 Hb_003786_080 Hb_001959_090--Hb_003786_080 Hb_119044_010 Hb_119044_010 Hb_000977_170--Hb_119044_010 Hb_000045_050 Hb_000045_050 Hb_000977_170--Hb_000045_050 Hb_000977_170--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_000977_170--Hb_003948_020 Hb_000516_080 Hb_000516_080 Hb_000977_170--Hb_000516_080 Hb_005181_120 Hb_005181_120 Hb_000977_170--Hb_005181_120 Hb_047418_010 Hb_047418_010 Hb_004236_040--Hb_047418_010 Hb_004236_040--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_004236_040--Hb_002411_100 Hb_000019_080 Hb_000019_080 Hb_004236_040--Hb_000019_080 Hb_004236_040--Hb_058620_080 Hb_005563_040 Hb_005563_040 Hb_004236_040--Hb_005563_040 Hb_000544_080 Hb_000544_080 Hb_058620_080--Hb_000544_080 Hb_009393_130 Hb_009393_130 Hb_058620_080--Hb_009393_130 Hb_010557_010 Hb_010557_010 Hb_058620_080--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_058620_080--Hb_000803_170 Hb_011519_050 Hb_011519_050 Hb_058620_080--Hb_011519_050 Hb_007803_040 Hb_007803_040 Hb_058620_080--Hb_007803_040 Hb_001579_280--Hb_000803_170 Hb_001579_280--Hb_000019_080 Hb_001579_280--Hb_005563_040 Hb_004837_100 Hb_004837_100 Hb_001579_280--Hb_004837_100 Hb_000089_140 Hb_000089_140 Hb_001579_280--Hb_000089_140 Hb_002811_310 Hb_002811_310 Hb_001579_280--Hb_002811_310 Hb_001300_130 Hb_001300_130 Hb_000130_330--Hb_001300_130 Hb_004117_150 Hb_004117_150 Hb_000130_330--Hb_004117_150 Hb_000062_480 Hb_000062_480 Hb_000130_330--Hb_000062_480 Hb_027298_020 Hb_027298_020 Hb_000130_330--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_000130_330--Hb_000703_070 Hb_000802_050 Hb_000802_050 Hb_000130_330--Hb_000802_050 Hb_000035_210 Hb_000035_210 Hb_003786_080--Hb_000035_210 Hb_001638_310 Hb_001638_310 Hb_003786_080--Hb_001638_310 Hb_000438_130 Hb_000438_130 Hb_003786_080--Hb_000438_130 Hb_003786_080--Hb_000977_170 Hb_006487_040 Hb_006487_040 Hb_003786_080--Hb_006487_040 Hb_003786_080--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.152998 0.0482037 0.01975 0.00944249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0119571 0 0.0360999 0.0111856 0.181237

CAGE analysis