Hb_000566_150

Information

Type -
Description -
Location Contig566: 121379-121822
Sequence    

Annotation

kegg
ID rcu:RCOM_1079440
description hypothetical protein
nr
ID XP_002514892.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000162_010 0.1271348282 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
3 Hb_002750_030 0.1327387787 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
4 Hb_006065_030 0.1345895123 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
5 Hb_000836_640 0.1358263548 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
6 Hb_001477_050 0.1365474607 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_005056_040 0.141727292 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
8 Hb_000776_090 0.1423902203 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
9 Hb_158092_050 0.1431647982 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
10 Hb_001500_090 0.1433209244 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000193_320 0.1469350698 - - conserved hypothetical protein [Ricinus communis]
12 Hb_024074_030 0.1482514089 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
13 Hb_002276_120 0.1490126369 - - hypothetical protein POPTR_0010s14710g [Populus trichocarpa]
14 Hb_001307_180 0.1517034213 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
15 Hb_011912_010 0.1550448614 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_010488_050 0.1559089925 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
17 Hb_004920_150 0.1560031193 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005523_030 0.1560125714 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
19 Hb_012633_020 0.1564335699 - - laccase, putative [Ricinus communis]
20 Hb_002739_140 0.1574747581 - - PREDICTED: protein TPX2 [Jatropha curcas]

Gene co-expression network

sample Hb_000566_150 Hb_000566_150 Hb_000162_010 Hb_000162_010 Hb_000566_150--Hb_000162_010 Hb_002750_030 Hb_002750_030 Hb_000566_150--Hb_002750_030 Hb_006065_030 Hb_006065_030 Hb_000566_150--Hb_006065_030 Hb_000836_640 Hb_000836_640 Hb_000566_150--Hb_000836_640 Hb_001477_050 Hb_001477_050 Hb_000566_150--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_000566_150--Hb_005056_040 Hb_000162_010--Hb_000836_640 Hb_000162_010--Hb_002750_030 Hb_000776_090 Hb_000776_090 Hb_000162_010--Hb_000776_090 Hb_000162_010--Hb_001477_050 Hb_000162_010--Hb_005056_040 Hb_002276_120 Hb_002276_120 Hb_000162_010--Hb_002276_120 Hb_002750_030--Hb_000836_640 Hb_002750_030--Hb_001477_050 Hb_002750_030--Hb_005056_040 Hb_001500_090 Hb_001500_090 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_042083_010 Hb_042083_010 Hb_006065_030--Hb_042083_010 Hb_012633_020 Hb_012633_020 Hb_006065_030--Hb_012633_020 Hb_015807_090 Hb_015807_090 Hb_006065_030--Hb_015807_090 Hb_006065_030--Hb_002750_030 Hb_005523_030 Hb_005523_030 Hb_006065_030--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_006065_030--Hb_000086_490 Hb_000836_640--Hb_001477_050 Hb_000836_640--Hb_000776_090 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_000836_640--Hb_005523_030 Hb_001477_050--Hb_005056_040 Hb_024074_030 Hb_024074_030 Hb_001477_050--Hb_024074_030 Hb_000037_150 Hb_000037_150 Hb_001477_050--Hb_000037_150 Hb_005056_040--Hb_000037_150 Hb_005056_040--Hb_000836_640 Hb_005056_040--Hb_024074_030 Hb_005056_040--Hb_001500_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120922 0.0542044 3.94777 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.212828 0.0543918 2.34315

CAGE analysis