Hb_017358_080

Information

Type -
Description -
Location Contig17358: 56656-56868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16528: 56787-57107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017358_080 0.0 - - -
2 Hb_000226_120 0.1480250737 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
3 Hb_000428_040 0.1931051012 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
4 Hb_147745_010 0.1972061147 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
5 Hb_000431_120 0.2123661813 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
6 Hb_116701_010 0.212545125 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
7 Hb_168392_010 0.2129661844 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_029622_040 0.2204730068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000130_350 0.2218073575 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_000906_090 0.221948572 - - hypothetical protein B456_002G267300 [Gossypium raimondii]
11 Hb_000236_230 0.2228305144 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
12 Hb_001366_110 0.2242710136 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002045_030 0.2250476153 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
14 Hb_000165_020 0.2251609746 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
15 Hb_000566_150 0.2280342441 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001758_090 0.2329307284 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
17 Hb_000086_460 0.2331205532 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
18 Hb_012090_030 0.2389892999 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
19 Hb_009662_070 0.2390812665 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
20 Hb_000173_140 0.240642759 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]

Gene co-expression network

sample Hb_017358_080 Hb_017358_080 Hb_000226_120 Hb_000226_120 Hb_017358_080--Hb_000226_120 Hb_000428_040 Hb_000428_040 Hb_017358_080--Hb_000428_040 Hb_147745_010 Hb_147745_010 Hb_017358_080--Hb_147745_010 Hb_000431_120 Hb_000431_120 Hb_017358_080--Hb_000431_120 Hb_116701_010 Hb_116701_010 Hb_017358_080--Hb_116701_010 Hb_168392_010 Hb_168392_010 Hb_017358_080--Hb_168392_010 Hb_000236_230 Hb_000236_230 Hb_000226_120--Hb_000236_230 Hb_000226_120--Hb_147745_010 Hb_001366_110 Hb_001366_110 Hb_000226_120--Hb_001366_110 Hb_000226_120--Hb_000428_040 Hb_000165_020 Hb_000165_020 Hb_000226_120--Hb_000165_020 Hb_004657_070 Hb_004657_070 Hb_000428_040--Hb_004657_070 Hb_000428_040--Hb_116701_010 Hb_000428_040--Hb_000236_230 Hb_000130_350 Hb_000130_350 Hb_000428_040--Hb_000130_350 Hb_008762_010 Hb_008762_010 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_147745_010--Hb_000165_020 Hb_147745_010--Hb_000236_230 Hb_150486_010 Hb_150486_010 Hb_147745_010--Hb_150486_010 Hb_147745_010--Hb_001366_110 Hb_000300_410 Hb_000300_410 Hb_147745_010--Hb_000300_410 Hb_000431_120--Hb_168392_010 Hb_004883_010 Hb_004883_010 Hb_000431_120--Hb_004883_010 Hb_003304_110 Hb_003304_110 Hb_000431_120--Hb_003304_110 Hb_000742_030 Hb_000742_030 Hb_000431_120--Hb_000742_030 Hb_000431_120--Hb_000226_120 Hb_116701_010--Hb_000130_350 Hb_158092_050 Hb_158092_050 Hb_116701_010--Hb_158092_050 Hb_116701_010--Hb_008762_010 Hb_000173_240 Hb_000173_240 Hb_116701_010--Hb_000173_240 Hb_116701_010--Hb_001366_110 Hb_168392_010--Hb_004883_010 Hb_029622_040 Hb_029622_040 Hb_168392_010--Hb_029622_040 Hb_000510_280 Hb_000510_280 Hb_168392_010--Hb_000510_280 Hb_009662_070 Hb_009662_070 Hb_168392_010--Hb_009662_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.4938 33.1032 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22814 1.79127 3.03713 0 19.0333

CAGE analysis