Hb_029622_040

Information

Type -
Description -
Location Contig29622: 29921-30969
Sequence    

Annotation

kegg
ID rcu:RCOM_1501440
description hypothetical protein
nr
ID XP_002511005.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9Y0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1501440 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ubiquinol-cytochrome-c reductase complex assembly factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30995: 30694-30911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029622_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009662_070 0.089790748 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
3 Hb_000007_190 0.1553071064 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
4 Hb_000392_500 0.1553849232 - - conserved hypothetical protein [Ricinus communis]
5 Hb_103225_040 0.1563468281 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
6 Hb_152868_020 0.156601708 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
7 Hb_003793_010 0.1622894802 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
8 Hb_064445_040 0.1630450721 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
9 Hb_010288_010 0.1635411208 - - Beta-glucosidase, putative [Ricinus communis]
10 Hb_000445_410 0.163702044 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
11 Hb_033149_010 0.1689149171 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_135737_010 0.1697156092 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
13 Hb_142204_010 0.1697491586 - - pyruvate decarboxylase [Saccharum officinarum]
14 Hb_000347_060 0.1736087414 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
15 Hb_000086_460 0.1737446181 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
16 Hb_064396_020 0.1753502144 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
17 Hb_077027_010 0.1783603912 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
18 Hb_006634_120 0.1787397246 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
19 Hb_061700_010 0.1805650036 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
20 Hb_008008_040 0.1809648727 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]

Gene co-expression network

sample Hb_029622_040 Hb_029622_040 Hb_009662_070 Hb_009662_070 Hb_029622_040--Hb_009662_070 Hb_000007_190 Hb_000007_190 Hb_029622_040--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_029622_040--Hb_000392_500 Hb_103225_040 Hb_103225_040 Hb_029622_040--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_029622_040--Hb_152868_020 Hb_003793_010 Hb_003793_010 Hb_029622_040--Hb_003793_010 Hb_002025_040 Hb_002025_040 Hb_009662_070--Hb_002025_040 Hb_000005_140 Hb_000005_140 Hb_009662_070--Hb_000005_140 Hb_069338_010 Hb_069338_010 Hb_009662_070--Hb_069338_010 Hb_002045_030 Hb_002045_030 Hb_009662_070--Hb_002045_030 Hb_135737_010 Hb_135737_010 Hb_009662_070--Hb_135737_010 Hb_000007_190--Hb_000392_500 Hb_000007_190--Hb_103225_040 Hb_000007_190--Hb_152868_020 Hb_064445_040 Hb_064445_040 Hb_000007_190--Hb_064445_040 Hb_010288_010 Hb_010288_010 Hb_000007_190--Hb_010288_010 Hb_000007_190--Hb_003793_010 Hb_000392_500--Hb_064445_040 Hb_000392_500--Hb_010288_010 Hb_000392_500--Hb_103225_040 Hb_000392_500--Hb_152868_020 Hb_000392_500--Hb_135737_010 Hb_103225_040--Hb_152868_020 Hb_103225_040--Hb_003793_010 Hb_000445_410 Hb_000445_410 Hb_103225_040--Hb_000445_410 Hb_033149_010 Hb_033149_010 Hb_103225_040--Hb_033149_010 Hb_152868_020--Hb_003793_010 Hb_152868_020--Hb_000445_410 Hb_142204_010 Hb_142204_010 Hb_152868_020--Hb_142204_010 Hb_003793_010--Hb_000445_410 Hb_008008_040 Hb_008008_040 Hb_003793_010--Hb_008008_040 Hb_003793_010--Hb_033149_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.17477 13.6289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.08164 0 0 7.34922

CAGE analysis