Hb_000005_140

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5: 161750-162658
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22650g
description hypothetical protein
nr
ID ABK95183.1
description unknown [Populus trichocarpa]
swissprot
ID Q681X4
description Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
trembl
ID A9PFN0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein zat5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_140 0.0 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
2 Hb_069338_010 0.1735542622 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000438_120 0.1812209122 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_009662_070 0.1859958872 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
5 Hb_005914_120 0.1948146115 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
6 Hb_002968_050 0.1958506094 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_002759_050 0.202868629 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
8 Hb_014361_010 0.2042195949 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
9 Hb_000579_110 0.2052674366 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
10 Hb_006569_080 0.2066621708 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
11 Hb_000099_140 0.2071140581 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
12 Hb_004957_050 0.2115489016 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
13 Hb_002876_340 0.2118677715 - - hypothetical protein POPTR_0013s11770g [Populus trichocarpa]
14 Hb_002886_010 0.2151418765 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000005_010 0.2152277646 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
16 Hb_029622_040 0.2152775546 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007574_040 0.2154407978 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
18 Hb_000264_040 0.2213921799 - - sugar transporter, putative [Ricinus communis]
19 Hb_000749_280 0.2241215512 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
20 Hb_002045_030 0.2246703576 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]

Gene co-expression network

sample Hb_000005_140 Hb_000005_140 Hb_069338_010 Hb_069338_010 Hb_000005_140--Hb_069338_010 Hb_000438_120 Hb_000438_120 Hb_000005_140--Hb_000438_120 Hb_009662_070 Hb_009662_070 Hb_000005_140--Hb_009662_070 Hb_005914_120 Hb_005914_120 Hb_000005_140--Hb_005914_120 Hb_002968_050 Hb_002968_050 Hb_000005_140--Hb_002968_050 Hb_002759_050 Hb_002759_050 Hb_000005_140--Hb_002759_050 Hb_053272_010 Hb_053272_010 Hb_069338_010--Hb_053272_010 Hb_069338_010--Hb_009662_070 Hb_002183_080 Hb_002183_080 Hb_069338_010--Hb_002183_080 Hb_000099_140 Hb_000099_140 Hb_069338_010--Hb_000099_140 Hb_069338_010--Hb_002968_050 Hb_000107_350 Hb_000107_350 Hb_000438_120--Hb_000107_350 Hb_000649_040 Hb_000649_040 Hb_000438_120--Hb_000649_040 Hb_002759_070 Hb_002759_070 Hb_000438_120--Hb_002759_070 Hb_000808_150 Hb_000808_150 Hb_000438_120--Hb_000808_150 Hb_005976_010 Hb_005976_010 Hb_000438_120--Hb_005976_010 Hb_161396_010 Hb_161396_010 Hb_000438_120--Hb_161396_010 Hb_029622_040 Hb_029622_040 Hb_009662_070--Hb_029622_040 Hb_002025_040 Hb_002025_040 Hb_009662_070--Hb_002025_040 Hb_002045_030 Hb_002045_030 Hb_009662_070--Hb_002045_030 Hb_135737_010 Hb_135737_010 Hb_009662_070--Hb_135737_010 Hb_002759_030 Hb_002759_030 Hb_005914_120--Hb_002759_030 Hb_005305_040 Hb_005305_040 Hb_005914_120--Hb_005305_040 Hb_000161_140 Hb_000161_140 Hb_005914_120--Hb_000161_140 Hb_014361_010 Hb_014361_010 Hb_005914_120--Hb_014361_010 Hb_008461_060 Hb_008461_060 Hb_005914_120--Hb_008461_060 Hb_000864_050 Hb_000864_050 Hb_005914_120--Hb_000864_050 Hb_003261_010 Hb_003261_010 Hb_002968_050--Hb_003261_010 Hb_000200_360 Hb_000200_360 Hb_002968_050--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_002968_050--Hb_001959_100 Hb_000510_280 Hb_000510_280 Hb_002968_050--Hb_000510_280 Hb_000264_040 Hb_000264_040 Hb_002968_050--Hb_000264_040 Hb_004586_270 Hb_004586_270 Hb_002968_050--Hb_004586_270 Hb_002759_050--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_002759_050--Hb_002886_010 Hb_000445_120 Hb_000445_120 Hb_002759_050--Hb_000445_120 Hb_002759_050--Hb_003261_010 Hb_002759_050--Hb_000200_360 Hb_002759_050--Hb_001959_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.675586 3.14423 15.44 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0571537 3.86543 0.3287 0.724813 12.7789

CAGE analysis