Hb_002045_030

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2045: 38273-38485
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO68558.1
description hypothetical protein CISIN_1g047687mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FMG2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047687mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description auxin-induced protein 22b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21028: 38125-39551 , PASA_asmbl_21029: 38125-39209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_030 0.0 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
2 Hb_000392_350 0.1300835823 - - zinc finger protein, putative [Ricinus communis]
3 Hb_006895_010 0.1331480204 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
4 Hb_094439_040 0.1332831435 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
5 Hb_001289_040 0.1350659936 - - NDR1/HIN1-like 1 [Theobroma cacao]
6 Hb_000707_090 0.1440487372 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
7 Hb_000557_080 0.144190645 - - conserved hypothetical protein [Ricinus communis]
8 Hb_151290_010 0.1442220674 - - unnamed protein product [Vitis vinifera]
9 Hb_077027_010 0.1453564744 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
10 Hb_001097_170 0.146743175 - - PREDICTED: protein NDR1 [Jatropha curcas]
11 Hb_003025_170 0.1473406389 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
12 Hb_064396_020 0.1474501063 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
13 Hb_000421_040 0.1546847681 - - Peptide transporter, putative [Ricinus communis]
14 Hb_000326_120 0.1552797137 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
15 Hb_104014_020 0.1554103272 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
16 Hb_000485_100 0.1555981283 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
17 Hb_000172_270 0.1561961652 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
18 Hb_003549_100 0.15627137 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
19 Hb_001863_470 0.1581711226 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
20 Hb_000580_200 0.1591550467 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002045_030 Hb_002045_030 Hb_000392_350 Hb_000392_350 Hb_002045_030--Hb_000392_350 Hb_006895_010 Hb_006895_010 Hb_002045_030--Hb_006895_010 Hb_094439_040 Hb_094439_040 Hb_002045_030--Hb_094439_040 Hb_001289_040 Hb_001289_040 Hb_002045_030--Hb_001289_040 Hb_000707_090 Hb_000707_090 Hb_002045_030--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_002045_030--Hb_000557_080 Hb_000421_040 Hb_000421_040 Hb_000392_350--Hb_000421_040 Hb_010172_040 Hb_010172_040 Hb_000392_350--Hb_010172_040 Hb_000392_350--Hb_000707_090 Hb_061700_010 Hb_061700_010 Hb_000392_350--Hb_061700_010 Hb_001357_290 Hb_001357_290 Hb_000392_350--Hb_001357_290 Hb_002809_180 Hb_002809_180 Hb_000392_350--Hb_002809_180 Hb_006895_010--Hb_001289_040 Hb_006895_010--Hb_094439_040 Hb_000485_100 Hb_000485_100 Hb_006895_010--Hb_000485_100 Hb_006895_010--Hb_000707_090 Hb_006895_010--Hb_000557_080 Hb_002391_010 Hb_002391_010 Hb_006895_010--Hb_002391_010 Hb_094439_040--Hb_001289_040 Hb_094439_040--Hb_000557_080 Hb_077027_010 Hb_077027_010 Hb_094439_040--Hb_077027_010 Hb_064396_020 Hb_064396_020 Hb_094439_040--Hb_064396_020 Hb_001097_170 Hb_001097_170 Hb_094439_040--Hb_001097_170 Hb_001289_040--Hb_000557_080 Hb_001289_040--Hb_077027_010 Hb_001289_040--Hb_064396_020 Hb_001289_040--Hb_000421_040 Hb_000707_090--Hb_000557_080 Hb_000707_090--Hb_000421_040 Hb_007382_110 Hb_007382_110 Hb_000707_090--Hb_007382_110 Hb_000707_090--Hb_001289_040 Hb_000343_070 Hb_000343_070 Hb_000707_090--Hb_000343_070 Hb_000557_080--Hb_064396_020 Hb_000557_080--Hb_077027_010 Hb_142204_010 Hb_142204_010 Hb_000557_080--Hb_142204_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.576511 0 19.9832 91.626 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11407 3.58254 2.02475 0 91.9945

CAGE analysis