Hb_069338_010

Information

Type -
Description -
Location Contig69338: 4991-5867
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_002532192.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9T1S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2161170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069338_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_053272_010 0.162252564 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
3 Hb_000005_140 0.1735542622 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
4 Hb_009662_070 0.2010861259 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
5 Hb_002183_080 0.2173244821 - - catalytic, putative [Ricinus communis]
6 Hb_000099_140 0.2180214993 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
7 Hb_002968_050 0.2341103007 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_002401_020 0.2389599691 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
9 Hb_000510_280 0.2613481031 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
10 Hb_002025_040 0.2696803685 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
11 Hb_029622_040 0.2699953162 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004024_020 0.271395118 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_030627_010 0.271902125 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]
14 Hb_000340_120 0.2749293816 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
15 Hb_005914_120 0.2775056171 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
16 Hb_001124_200 0.2944447244 - - hypothetical protein B456_011G186000 [Gossypium raimondii]
17 Hb_000431_120 0.2959176954 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
18 Hb_000094_170 0.2962532145 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
19 Hb_003261_010 0.2978973604 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
20 Hb_002045_030 0.3003857508 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]

Gene co-expression network

sample Hb_069338_010 Hb_069338_010 Hb_053272_010 Hb_053272_010 Hb_069338_010--Hb_053272_010 Hb_000005_140 Hb_000005_140 Hb_069338_010--Hb_000005_140 Hb_009662_070 Hb_009662_070 Hb_069338_010--Hb_009662_070 Hb_002183_080 Hb_002183_080 Hb_069338_010--Hb_002183_080 Hb_000099_140 Hb_000099_140 Hb_069338_010--Hb_000099_140 Hb_002968_050 Hb_002968_050 Hb_069338_010--Hb_002968_050 Hb_053272_010--Hb_000099_140 Hb_053272_010--Hb_009662_070 Hb_053272_010--Hb_000005_140 Hb_002401_020 Hb_002401_020 Hb_053272_010--Hb_002401_020 Hb_002025_040 Hb_002025_040 Hb_053272_010--Hb_002025_040 Hb_000438_120 Hb_000438_120 Hb_000005_140--Hb_000438_120 Hb_000005_140--Hb_009662_070 Hb_005914_120 Hb_005914_120 Hb_000005_140--Hb_005914_120 Hb_000005_140--Hb_002968_050 Hb_002759_050 Hb_002759_050 Hb_000005_140--Hb_002759_050 Hb_029622_040 Hb_029622_040 Hb_009662_070--Hb_029622_040 Hb_009662_070--Hb_002025_040 Hb_002045_030 Hb_002045_030 Hb_009662_070--Hb_002045_030 Hb_135737_010 Hb_135737_010 Hb_009662_070--Hb_135737_010 Hb_030627_010 Hb_030627_010 Hb_002183_080--Hb_030627_010 Hb_000679_030 Hb_000679_030 Hb_002183_080--Hb_000679_030 Hb_000946_060 Hb_000946_060 Hb_002183_080--Hb_000946_060 Hb_003683_070 Hb_003683_070 Hb_002183_080--Hb_003683_070 Hb_001205_040 Hb_001205_040 Hb_002183_080--Hb_001205_040 Hb_000099_140--Hb_000005_140 Hb_002119_140 Hb_002119_140 Hb_000099_140--Hb_002119_140 Hb_002876_340 Hb_002876_340 Hb_000099_140--Hb_002876_340 Hb_022092_080 Hb_022092_080 Hb_000099_140--Hb_022092_080 Hb_003261_010 Hb_003261_010 Hb_002968_050--Hb_003261_010 Hb_000200_360 Hb_000200_360 Hb_002968_050--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_002968_050--Hb_001959_100 Hb_000510_280 Hb_000510_280 Hb_002968_050--Hb_000510_280 Hb_000264_040 Hb_000264_040 Hb_002968_050--Hb_000264_040 Hb_004586_270 Hb_004586_270 Hb_002968_050--Hb_004586_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0226282 0.0609832 0.343499 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.19542 0 0 0.394641

CAGE analysis