Hb_003683_070

Information

Type -
Description -
Location Contig3683: 81935-85540
Sequence    

Annotation

kegg
ID rcu:RCOM_0964770
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517788.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVL9
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964770 PE=4 SV=1
Gene Ontology
ID GO:0003824
description tetraketide alpha-pyrone reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_070 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_010607_010 0.1638288538 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
3 Hb_000879_240 0.1645130647 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631008 [Jatropha curcas]
4 Hb_003654_020 0.1691674217 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_001771_060 0.1692199002 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
6 Hb_000815_090 0.17716328 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
7 Hb_000186_180 0.1807329071 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
8 Hb_000732_300 0.1841602317 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
9 Hb_003071_050 0.1876018695 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
10 Hb_008406_060 0.1889581945 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
11 Hb_161103_010 0.1912581728 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_018134_010 0.1926282224 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
13 Hb_001619_090 0.1926423057 - - heat shock protein binding protein, putative [Ricinus communis]
14 Hb_003073_040 0.1990561877 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
15 Hb_000167_100 0.2020126393 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001221_070 0.2030527673 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
17 Hb_004109_150 0.2033710391 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
18 Hb_006243_010 0.2038275984 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
19 Hb_002284_160 0.2045355232 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_006570_060 0.2065425381 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]

Gene co-expression network

sample Hb_003683_070 Hb_003683_070 Hb_010607_010 Hb_010607_010 Hb_003683_070--Hb_010607_010 Hb_000879_240 Hb_000879_240 Hb_003683_070--Hb_000879_240 Hb_003654_020 Hb_003654_020 Hb_003683_070--Hb_003654_020 Hb_001771_060 Hb_001771_060 Hb_003683_070--Hb_001771_060 Hb_000815_090 Hb_000815_090 Hb_003683_070--Hb_000815_090 Hb_000186_180 Hb_000186_180 Hb_003683_070--Hb_000186_180 Hb_010607_010--Hb_003654_020 Hb_010607_010--Hb_000186_180 Hb_000167_100 Hb_000167_100 Hb_010607_010--Hb_000167_100 Hb_006243_010 Hb_006243_010 Hb_010607_010--Hb_006243_010 Hb_000320_390 Hb_000320_390 Hb_010607_010--Hb_000320_390 Hb_002999_130 Hb_002999_130 Hb_000879_240--Hb_002999_130 Hb_000879_240--Hb_001771_060 Hb_000879_240--Hb_000186_180 Hb_000879_240--Hb_010607_010 Hb_000230_250 Hb_000230_250 Hb_000879_240--Hb_000230_250 Hb_003654_020--Hb_000186_180 Hb_003209_150 Hb_003209_150 Hb_003654_020--Hb_003209_150 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_000031_320 Hb_000031_320 Hb_003654_020--Hb_000031_320 Hb_002307_120 Hb_002307_120 Hb_003654_020--Hb_002307_120 Hb_002818_160 Hb_002818_160 Hb_003654_020--Hb_002818_160 Hb_004108_120 Hb_004108_120 Hb_001771_060--Hb_004108_120 Hb_001771_060--Hb_002999_130 Hb_028285_020 Hb_028285_020 Hb_001771_060--Hb_028285_020 Hb_002999_140 Hb_002999_140 Hb_001771_060--Hb_002999_140 Hb_009557_080 Hb_009557_080 Hb_001771_060--Hb_009557_080 Hb_000656_260 Hb_000656_260 Hb_001771_060--Hb_000656_260 Hb_132840_170 Hb_132840_170 Hb_000815_090--Hb_132840_170 Hb_013394_120 Hb_013394_120 Hb_000815_090--Hb_013394_120 Hb_002284_160 Hb_002284_160 Hb_000815_090--Hb_002284_160 Hb_000002_500 Hb_000002_500 Hb_000815_090--Hb_000002_500 Hb_001115_070 Hb_001115_070 Hb_000815_090--Hb_001115_070 Hb_000818_090 Hb_000818_090 Hb_000815_090--Hb_000818_090 Hb_000186_180--Hb_002818_160 Hb_000186_180--Hb_000031_320 Hb_000186_180--Hb_000167_100 Hb_000186_180--Hb_002307_120 Hb_001677_170 Hb_001677_170 Hb_000186_180--Hb_001677_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.20483 0.213875 0.193596 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0450733 0 0 0.274554

CAGE analysis