Hb_000879_240

Information

Type transcription factor
Description TF Family: PHD
Location Contig879: 262922-264676
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11940g
description POPTRDRAFT_551783; hypothetical protein
nr
ID XP_012068391.1
description PREDICTED: uncharacterized protein LOC105631008 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067KZL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16029 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_240 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631008 [Jatropha curcas]
2 Hb_003683_070 0.1645130647 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_002999_130 0.1784786185 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
4 Hb_001771_060 0.1843210154 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
5 Hb_000186_180 0.2096631032 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
6 Hb_010607_010 0.2106335462 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
7 Hb_000230_250 0.2112098245 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
8 Hb_004108_120 0.2115441594 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
9 Hb_004109_150 0.2124572688 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
10 Hb_171900_030 0.2131300535 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
11 Hb_010180_050 0.2133106935 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
12 Hb_006358_030 0.2144443915 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
13 Hb_003654_020 0.2152120674 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_005772_020 0.2153710474 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_003970_010 0.2196678591 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
16 Hb_000032_590 0.2207092461 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
17 Hb_002030_100 0.2242501082 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
18 Hb_000594_150 0.2248781759 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
19 Hb_012814_030 0.2273557415 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
20 Hb_002211_020 0.2281353079 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000879_240 Hb_000879_240 Hb_003683_070 Hb_003683_070 Hb_000879_240--Hb_003683_070 Hb_002999_130 Hb_002999_130 Hb_000879_240--Hb_002999_130 Hb_001771_060 Hb_001771_060 Hb_000879_240--Hb_001771_060 Hb_000186_180 Hb_000186_180 Hb_000879_240--Hb_000186_180 Hb_010607_010 Hb_010607_010 Hb_000879_240--Hb_010607_010 Hb_000230_250 Hb_000230_250 Hb_000879_240--Hb_000230_250 Hb_003683_070--Hb_010607_010 Hb_003654_020 Hb_003654_020 Hb_003683_070--Hb_003654_020 Hb_003683_070--Hb_001771_060 Hb_000815_090 Hb_000815_090 Hb_003683_070--Hb_000815_090 Hb_003683_070--Hb_000186_180 Hb_073171_050 Hb_073171_050 Hb_002999_130--Hb_073171_050 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_001369_020 Hb_001369_020 Hb_002999_130--Hb_001369_020 Hb_004108_120 Hb_004108_120 Hb_001771_060--Hb_004108_120 Hb_001771_060--Hb_002999_130 Hb_028285_020 Hb_028285_020 Hb_001771_060--Hb_028285_020 Hb_002999_140 Hb_002999_140 Hb_001771_060--Hb_002999_140 Hb_009557_080 Hb_009557_080 Hb_001771_060--Hb_009557_080 Hb_001771_060--Hb_000656_260 Hb_000186_180--Hb_003654_020 Hb_002818_160 Hb_002818_160 Hb_000186_180--Hb_002818_160 Hb_000031_320 Hb_000031_320 Hb_000186_180--Hb_000031_320 Hb_000167_100 Hb_000167_100 Hb_000186_180--Hb_000167_100 Hb_002307_120 Hb_002307_120 Hb_000186_180--Hb_002307_120 Hb_001677_170 Hb_001677_170 Hb_000186_180--Hb_001677_170 Hb_010607_010--Hb_003654_020 Hb_010607_010--Hb_000186_180 Hb_010607_010--Hb_000167_100 Hb_006243_010 Hb_006243_010 Hb_010607_010--Hb_006243_010 Hb_000320_390 Hb_000320_390 Hb_010607_010--Hb_000320_390 Hb_004880_120 Hb_004880_120 Hb_000230_250--Hb_004880_120 Hb_005772_020 Hb_005772_020 Hb_000230_250--Hb_005772_020 Hb_010175_050 Hb_010175_050 Hb_000230_250--Hb_010175_050 Hb_000230_250--Hb_010180_050 Hb_004007_210 Hb_004007_210 Hb_000230_250--Hb_004007_210 Hb_000032_590 Hb_000032_590 Hb_000230_250--Hb_000032_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0912335 0.0866845 0.0255122 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0205489 0 0 0.0864935

CAGE analysis