Hb_004108_120

Information

Type -
Description -
Location Contig4108: 67809-68693
Sequence    

Annotation

kegg
ID rcu:RCOM_0176460
description hypothetical protein
nr
ID XP_012092289.1
description PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
swissprot
ID Q93ZT5
description EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1
trembl
ID A0A067JN99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21966 PE=4 SV=1
Gene Ontology
ID GO:0005634
description eid1-like f-box protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_120 0.0 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
2 Hb_028285_020 0.0928704956 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
3 Hb_001771_060 0.1197619985 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
4 Hb_002999_130 0.1455038299 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
5 Hb_019026_040 0.1479958286 - - S-locus lectin protein kinase family protein [Theobroma cacao]
6 Hb_152414_010 0.1529900498 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
7 Hb_073171_050 0.1535831277 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
8 Hb_004907_070 0.1546933312 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
9 Hb_012814_030 0.1555010399 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
10 Hb_011457_080 0.1556367992 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
11 Hb_000656_260 0.1599949394 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
12 Hb_000594_150 0.1601994687 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
13 Hb_000156_080 0.1623540685 - - Potassium channel KAT2, putative [Ricinus communis]
14 Hb_036492_020 0.1668135616 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_115114_010 0.1670613148 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009557_080 0.1674187218 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
17 Hb_001369_020 0.1674388382 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
18 Hb_090306_010 0.1694315728 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
19 Hb_000347_380 0.1706010312 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_002783_140 0.1717491702 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_120 Hb_004108_120 Hb_028285_020 Hb_028285_020 Hb_004108_120--Hb_028285_020 Hb_001771_060 Hb_001771_060 Hb_004108_120--Hb_001771_060 Hb_002999_130 Hb_002999_130 Hb_004108_120--Hb_002999_130 Hb_019026_040 Hb_019026_040 Hb_004108_120--Hb_019026_040 Hb_152414_010 Hb_152414_010 Hb_004108_120--Hb_152414_010 Hb_073171_050 Hb_073171_050 Hb_004108_120--Hb_073171_050 Hb_028285_020--Hb_073171_050 Hb_001369_020 Hb_001369_020 Hb_028285_020--Hb_001369_020 Hb_007193_030 Hb_007193_030 Hb_028285_020--Hb_007193_030 Hb_028285_020--Hb_002999_130 Hb_002783_140 Hb_002783_140 Hb_028285_020--Hb_002783_140 Hb_001771_060--Hb_002999_130 Hb_001771_060--Hb_028285_020 Hb_002999_140 Hb_002999_140 Hb_001771_060--Hb_002999_140 Hb_009557_080 Hb_009557_080 Hb_001771_060--Hb_009557_080 Hb_000656_260 Hb_000656_260 Hb_001771_060--Hb_000656_260 Hb_002999_130--Hb_073171_050 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_002999_130--Hb_001369_020 Hb_003811_030 Hb_003811_030 Hb_019026_040--Hb_003811_030 Hb_107552_020 Hb_107552_020 Hb_019026_040--Hb_107552_020 Hb_010175_050 Hb_010175_050 Hb_019026_040--Hb_010175_050 Hb_000347_380 Hb_000347_380 Hb_019026_040--Hb_000347_380 Hb_036492_020 Hb_036492_020 Hb_019026_040--Hb_036492_020 Hb_004007_210 Hb_004007_210 Hb_019026_040--Hb_004007_210 Hb_004879_030 Hb_004879_030 Hb_152414_010--Hb_004879_030 Hb_006358_030 Hb_006358_030 Hb_152414_010--Hb_006358_030 Hb_115114_010 Hb_115114_010 Hb_152414_010--Hb_115114_010 Hb_152414_010--Hb_036492_020 Hb_026415_010 Hb_026415_010 Hb_152414_010--Hb_026415_010 Hb_003929_040 Hb_003929_040 Hb_152414_010--Hb_003929_040 Hb_073171_050--Hb_001369_020 Hb_073171_050--Hb_007193_030 Hb_001623_410 Hb_001623_410 Hb_073171_050--Hb_001623_410 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0645924 8.06466 3.37543 2.25347 0 0.0227399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.177443 0.558162 0 0.469159 4.42961

CAGE analysis