Hb_022092_080

Information

Type -
Description -
Location Contig22092: 46329-47957
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_080 0.0 - - -
2 Hb_007229_080 0.1717469548 - - Nonspecific lipid-transfer protein A, putative [Ricinus communis]
3 Hb_077731_030 0.1867268112 - - sterol desaturase, putative [Ricinus communis]
4 Hb_143766_070 0.2145049379 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
5 Hb_002592_020 0.2281784202 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
6 Hb_001989_030 0.2354803221 - - PREDICTED: copper transport protein ATX1 [Jatropha curcas]
7 Hb_000959_320 0.2426214277 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
8 Hb_001221_450 0.2441907382 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002119_140 0.2449351052 - - PREDICTED: uncharacterized protein LOC105634172 [Jatropha curcas]
10 Hb_000099_140 0.253729609 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
11 Hb_048476_130 0.2576991286 - - scab resistance family protein [Populus trichocarpa]
12 Hb_003583_010 0.2632513183 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
13 Hb_000740_150 0.2696048565 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
14 Hb_000920_230 0.2733831983 - - DNA binding protein, putative [Ricinus communis]
15 Hb_002289_140 0.2787366528 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000028_080 0.2792043986 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
17 Hb_000003_210 0.279488152 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
18 Hb_001863_010 0.286079669 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
19 Hb_106552_070 0.2865490238 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005253_020 0.2871293387 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]

Gene co-expression network

sample Hb_022092_080 Hb_022092_080 Hb_007229_080 Hb_007229_080 Hb_022092_080--Hb_007229_080 Hb_077731_030 Hb_077731_030 Hb_022092_080--Hb_077731_030 Hb_143766_070 Hb_143766_070 Hb_022092_080--Hb_143766_070 Hb_002592_020 Hb_002592_020 Hb_022092_080--Hb_002592_020 Hb_001989_030 Hb_001989_030 Hb_022092_080--Hb_001989_030 Hb_000959_320 Hb_000959_320 Hb_022092_080--Hb_000959_320 Hb_007229_080--Hb_077731_030 Hb_007229_080--Hb_001989_030 Hb_000028_080 Hb_000028_080 Hb_007229_080--Hb_000028_080 Hb_001635_140 Hb_001635_140 Hb_007229_080--Hb_001635_140 Hb_002224_020 Hb_002224_020 Hb_007229_080--Hb_002224_020 Hb_077731_030--Hb_001989_030 Hb_077731_030--Hb_000028_080 Hb_002030_130 Hb_002030_130 Hb_077731_030--Hb_002030_130 Hb_006198_100 Hb_006198_100 Hb_077731_030--Hb_006198_100 Hb_059226_010 Hb_059226_010 Hb_077731_030--Hb_059226_010 Hb_000057_100 Hb_000057_100 Hb_143766_070--Hb_000057_100 Hb_004881_070 Hb_004881_070 Hb_143766_070--Hb_004881_070 Hb_004374_160 Hb_004374_160 Hb_143766_070--Hb_004374_160 Hb_003052_020 Hb_003052_020 Hb_143766_070--Hb_003052_020 Hb_000635_100 Hb_000635_100 Hb_143766_070--Hb_000635_100 Hb_000639_010 Hb_000639_010 Hb_143766_070--Hb_000639_010 Hb_003583_010 Hb_003583_010 Hb_002592_020--Hb_003583_010 Hb_000510_280 Hb_000510_280 Hb_002592_020--Hb_000510_280 Hb_002592_020--Hb_000959_320 Hb_000920_230 Hb_000920_230 Hb_002592_020--Hb_000920_230 Hb_005181_140 Hb_005181_140 Hb_002592_020--Hb_005181_140 Hb_007625_010 Hb_007625_010 Hb_002592_020--Hb_007625_010 Hb_001989_030--Hb_000028_080 Hb_000538_290 Hb_000538_290 Hb_001989_030--Hb_000538_290 Hb_001989_030--Hb_006198_100 Hb_001989_030--Hb_059226_010 Hb_003050_020 Hb_003050_020 Hb_000959_320--Hb_003050_020 Hb_000959_320--Hb_003583_010 Hb_000907_160 Hb_000907_160 Hb_000959_320--Hb_000907_160 Hb_000959_320--Hb_000920_230 Hb_000103_070 Hb_000103_070 Hb_000959_320--Hb_000103_070 Hb_000003_210 Hb_000003_210 Hb_000959_320--Hb_000003_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.07642 1.7405 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.737227 0 0.172018 0.5401

CAGE analysis