Hb_000028_080

Information

Type -
Description -
Location Contig28: 87992-88736
Sequence    

Annotation

kegg
ID rcu:RCOM_0569680
description hypothetical protein
nr
ID XP_012086268.1
description PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
swissprot
ID Q6DR24
description Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1
trembl
ID A0A067JQ15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22707 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29174: 88002-88812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_080 0.0 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
2 Hb_001007_020 0.1058814772 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
3 Hb_000072_230 0.1109611332 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
4 Hb_174639_010 0.1119658818 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_003750_120 0.1137926215 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
6 Hb_006198_100 0.1163871033 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
7 Hb_000342_040 0.1165009997 - - pollen specific protein sf21, putative [Ricinus communis]
8 Hb_000418_110 0.1199039422 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
9 Hb_002894_060 0.1209598049 - - respiratory burst oxidase D [Manihot esculenta]
10 Hb_001056_040 0.1209751965 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
11 Hb_003894_110 0.1228609495 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
12 Hb_000107_360 0.1230440244 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
13 Hb_002045_210 0.1235609336 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
14 Hb_000363_390 0.1278868368 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
15 Hb_000134_130 0.1292670516 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
16 Hb_005496_040 0.1296580349 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
17 Hb_000320_010 0.130043874 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001989_030 0.1349710728 - - PREDICTED: copper transport protein ATX1 [Jatropha curcas]
19 Hb_001349_050 0.1359634769 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
20 Hb_001623_250 0.1365174927 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_080 Hb_000028_080 Hb_001007_020 Hb_001007_020 Hb_000028_080--Hb_001007_020 Hb_000072_230 Hb_000072_230 Hb_000028_080--Hb_000072_230 Hb_174639_010 Hb_174639_010 Hb_000028_080--Hb_174639_010 Hb_003750_120 Hb_003750_120 Hb_000028_080--Hb_003750_120 Hb_006198_100 Hb_006198_100 Hb_000028_080--Hb_006198_100 Hb_000342_040 Hb_000342_040 Hb_000028_080--Hb_000342_040 Hb_000418_110 Hb_000418_110 Hb_001007_020--Hb_000418_110 Hb_002894_060 Hb_002894_060 Hb_001007_020--Hb_002894_060 Hb_000134_130 Hb_000134_130 Hb_001007_020--Hb_000134_130 Hb_001007_020--Hb_174639_010 Hb_003894_110 Hb_003894_110 Hb_001007_020--Hb_003894_110 Hb_001349_050 Hb_001349_050 Hb_001007_020--Hb_001349_050 Hb_000107_360 Hb_000107_360 Hb_000072_230--Hb_000107_360 Hb_000331_170 Hb_000331_170 Hb_000072_230--Hb_000331_170 Hb_000417_090 Hb_000417_090 Hb_000072_230--Hb_000417_090 Hb_000031_240 Hb_000031_240 Hb_000072_230--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_000072_230--Hb_011310_170 Hb_000964_050 Hb_000964_050 Hb_000072_230--Hb_000964_050 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_001709_120 Hb_001709_120 Hb_174639_010--Hb_001709_120 Hb_001056_040 Hb_001056_040 Hb_174639_010--Hb_001056_040 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330 Hb_000320_010 Hb_000320_010 Hb_174639_010--Hb_000320_010 Hb_005496_040 Hb_005496_040 Hb_003750_120--Hb_005496_040 Hb_000003_750 Hb_000003_750 Hb_003750_120--Hb_000003_750 Hb_001159_090 Hb_001159_090 Hb_003750_120--Hb_001159_090 Hb_003750_120--Hb_001007_020 Hb_002045_210 Hb_002045_210 Hb_003750_120--Hb_002045_210 Hb_003750_120--Hb_000418_110 Hb_059226_010 Hb_059226_010 Hb_006198_100--Hb_059226_010 Hb_002203_010 Hb_002203_010 Hb_006198_100--Hb_002203_010 Hb_002836_110 Hb_002836_110 Hb_006198_100--Hb_002836_110 Hb_000538_290 Hb_000538_290 Hb_006198_100--Hb_000538_290 Hb_009113_020 Hb_009113_020 Hb_006198_100--Hb_009113_020 Hb_001623_250 Hb_001623_250 Hb_006198_100--Hb_001623_250 Hb_000342_040--Hb_005496_040 Hb_000342_040--Hb_002045_210 Hb_004117_090 Hb_004117_090 Hb_000342_040--Hb_004117_090 Hb_000441_130 Hb_000441_130 Hb_000342_040--Hb_000441_130 Hb_000032_420 Hb_000032_420 Hb_000342_040--Hb_000032_420 Hb_001544_090 Hb_001544_090 Hb_000342_040--Hb_001544_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0470001 0.107084 3.39541 3.91779 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.135263 0 0.165436 1.06409

CAGE analysis