Hb_077731_030

Information

Type -
Description -
Location Contig77731: 24007-27252
Sequence    

Annotation

kegg
ID rcu:RCOM_0658920
description sterol desaturase, putative
nr
ID XP_002526512.1
description sterol desaturase, putative [Ricinus communis]
swissprot
ID F4HVY0
description Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1
trembl
ID B9SKI2
description Sterol desaturase, putative OS=Ricinus communis GN=RCOM_0658920 PE=4 SV=1
Gene Ontology
ID GO:0005506
description protein eceriferum 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57864: 24426-24831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077731_030 0.0 - - sterol desaturase, putative [Ricinus communis]
2 Hb_007229_080 0.0503266977 - - Nonspecific lipid-transfer protein A, putative [Ricinus communis]
3 Hb_001989_030 0.108048545 - - PREDICTED: copper transport protein ATX1 [Jatropha curcas]
4 Hb_000028_080 0.1574437571 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
5 Hb_002030_130 0.1737283555 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
6 Hb_006198_100 0.1741847424 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
7 Hb_059226_010 0.1769960236 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
8 Hb_127839_010 0.1782175786 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
9 Hb_143766_070 0.1796942657 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
10 Hb_001863_010 0.1813696394 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
11 Hb_001863_330 0.1837676798 - - RNA-binding region-containing protein, putative [Ricinus communis]
12 Hb_022092_080 0.1867268112 - - -
13 Hb_000563_470 0.1869574611 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
14 Hb_000538_290 0.1879939782 - - hypothetical protein RCOM_0303940 [Ricinus communis]
15 Hb_016333_010 0.1880839434 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
16 Hb_149882_010 0.1889788145 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
17 Hb_002224_020 0.1899228583 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
18 Hb_005181_170 0.190120062 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
19 Hb_000107_360 0.1904181841 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
20 Hb_007632_070 0.190521631 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_077731_030 Hb_077731_030 Hb_007229_080 Hb_007229_080 Hb_077731_030--Hb_007229_080 Hb_001989_030 Hb_001989_030 Hb_077731_030--Hb_001989_030 Hb_000028_080 Hb_000028_080 Hb_077731_030--Hb_000028_080 Hb_002030_130 Hb_002030_130 Hb_077731_030--Hb_002030_130 Hb_006198_100 Hb_006198_100 Hb_077731_030--Hb_006198_100 Hb_059226_010 Hb_059226_010 Hb_077731_030--Hb_059226_010 Hb_007229_080--Hb_001989_030 Hb_007229_080--Hb_000028_080 Hb_022092_080 Hb_022092_080 Hb_007229_080--Hb_022092_080 Hb_001635_140 Hb_001635_140 Hb_007229_080--Hb_001635_140 Hb_002224_020 Hb_002224_020 Hb_007229_080--Hb_002224_020 Hb_001989_030--Hb_000028_080 Hb_000538_290 Hb_000538_290 Hb_001989_030--Hb_000538_290 Hb_001989_030--Hb_006198_100 Hb_001989_030--Hb_059226_010 Hb_001007_020 Hb_001007_020 Hb_000028_080--Hb_001007_020 Hb_000072_230 Hb_000072_230 Hb_000028_080--Hb_000072_230 Hb_174639_010 Hb_174639_010 Hb_000028_080--Hb_174639_010 Hb_003750_120 Hb_003750_120 Hb_000028_080--Hb_003750_120 Hb_000028_080--Hb_006198_100 Hb_000342_040 Hb_000342_040 Hb_000028_080--Hb_000342_040 Hb_003228_050 Hb_003228_050 Hb_002030_130--Hb_003228_050 Hb_001524_120 Hb_001524_120 Hb_002030_130--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_002030_130--Hb_005183_150 Hb_124677_050 Hb_124677_050 Hb_002030_130--Hb_124677_050 Hb_007632_210 Hb_007632_210 Hb_002030_130--Hb_007632_210 Hb_001999_160 Hb_001999_160 Hb_002030_130--Hb_001999_160 Hb_006198_100--Hb_059226_010 Hb_002203_010 Hb_002203_010 Hb_006198_100--Hb_002203_010 Hb_002836_110 Hb_002836_110 Hb_006198_100--Hb_002836_110 Hb_006198_100--Hb_000538_290 Hb_009113_020 Hb_009113_020 Hb_006198_100--Hb_009113_020 Hb_001623_250 Hb_001623_250 Hb_006198_100--Hb_001623_250 Hb_000418_040 Hb_000418_040 Hb_059226_010--Hb_000418_040 Hb_006693_010 Hb_006693_010 Hb_059226_010--Hb_006693_010 Hb_059226_010--Hb_000538_290 Hb_000107_360 Hb_000107_360 Hb_059226_010--Hb_000107_360 Hb_059226_010--Hb_009113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.140032 0.163774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0194743 0 0.0232625 0.0410509

CAGE analysis