Hb_001989_030

Information

Type -
Description -
Location Contig1989: 90683-91515
Sequence    

Annotation

kegg
ID rcu:RCOM_0756770
description hypothetical protein
nr
ID XP_012072815.1
description PREDICTED: copper transport protein ATX1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S5N4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0756770 PE=4 SV=1
Gene Ontology
ID GO:0046872
description copper transport protein atx1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19945: 90611-91444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_030 0.0 - - PREDICTED: copper transport protein ATX1 [Jatropha curcas]
2 Hb_077731_030 0.108048545 - - sterol desaturase, putative [Ricinus communis]
3 Hb_007229_080 0.1212370496 - - Nonspecific lipid-transfer protein A, putative [Ricinus communis]
4 Hb_000028_080 0.1349710728 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
5 Hb_000538_290 0.1374741292 - - hypothetical protein RCOM_0303940 [Ricinus communis]
6 Hb_006198_100 0.1396089412 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
7 Hb_059226_010 0.1454456347 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
8 Hb_003228_050 0.1482964885 - - chromomethylase [Hevea brasiliensis]
9 Hb_001348_100 0.1504522833 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
10 Hb_048476_130 0.1563059964 - - scab resistance family protein [Populus trichocarpa]
11 Hb_003750_120 0.1599098144 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
12 Hb_002203_010 0.1613153146 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
13 Hb_001863_010 0.1614111033 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
14 Hb_000522_160 0.1623788616 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_001971_040 0.1624759949 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
16 Hb_000107_360 0.1624812335 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
17 Hb_006693_010 0.1628019294 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
18 Hb_012691_020 0.1648651138 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
19 Hb_000187_050 0.1658589796 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
20 Hb_006810_040 0.1662554307 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001989_030 Hb_001989_030 Hb_077731_030 Hb_077731_030 Hb_001989_030--Hb_077731_030 Hb_007229_080 Hb_007229_080 Hb_001989_030--Hb_007229_080 Hb_000028_080 Hb_000028_080 Hb_001989_030--Hb_000028_080 Hb_000538_290 Hb_000538_290 Hb_001989_030--Hb_000538_290 Hb_006198_100 Hb_006198_100 Hb_001989_030--Hb_006198_100 Hb_059226_010 Hb_059226_010 Hb_001989_030--Hb_059226_010 Hb_077731_030--Hb_007229_080 Hb_077731_030--Hb_000028_080 Hb_002030_130 Hb_002030_130 Hb_077731_030--Hb_002030_130 Hb_077731_030--Hb_006198_100 Hb_077731_030--Hb_059226_010 Hb_007229_080--Hb_000028_080 Hb_022092_080 Hb_022092_080 Hb_007229_080--Hb_022092_080 Hb_001635_140 Hb_001635_140 Hb_007229_080--Hb_001635_140 Hb_002224_020 Hb_002224_020 Hb_007229_080--Hb_002224_020 Hb_001007_020 Hb_001007_020 Hb_000028_080--Hb_001007_020 Hb_000072_230 Hb_000072_230 Hb_000028_080--Hb_000072_230 Hb_174639_010 Hb_174639_010 Hb_000028_080--Hb_174639_010 Hb_003750_120 Hb_003750_120 Hb_000028_080--Hb_003750_120 Hb_000028_080--Hb_006198_100 Hb_000342_040 Hb_000342_040 Hb_000028_080--Hb_000342_040 Hb_002686_320 Hb_002686_320 Hb_000538_290--Hb_002686_320 Hb_009113_020 Hb_009113_020 Hb_000538_290--Hb_009113_020 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000701_020 Hb_000701_020 Hb_000538_290--Hb_000701_020 Hb_000977_190 Hb_000977_190 Hb_000538_290--Hb_000977_190 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050 Hb_006198_100--Hb_059226_010 Hb_002203_010 Hb_002203_010 Hb_006198_100--Hb_002203_010 Hb_002836_110 Hb_002836_110 Hb_006198_100--Hb_002836_110 Hb_006198_100--Hb_000538_290 Hb_006198_100--Hb_009113_020 Hb_001623_250 Hb_001623_250 Hb_006198_100--Hb_001623_250 Hb_000418_040 Hb_000418_040 Hb_059226_010--Hb_000418_040 Hb_006693_010 Hb_006693_010 Hb_059226_010--Hb_006693_010 Hb_059226_010--Hb_000538_290 Hb_000107_360 Hb_000107_360 Hb_059226_010--Hb_000107_360 Hb_059226_010--Hb_009113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.257843 5.79883 5.93235 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.63837 0 0.753708 1.11813

CAGE analysis