Hb_007229_080

Information

Type -
Description -
Location Contig7229: 54988-55332
Sequence    

Annotation

kegg
ID rcu:RCOM_1608560
description Nonspecific lipid-transfer protein A, putative
nr
ID XP_002511594.1
description Nonspecific lipid-transfer protein A, putative [Ricinus communis]
swissprot
ID P10973
description Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1
trembl
ID B9RD05
description Non-specific lipid-transfer protein OS=Ricinus communis GN=RCOM_1608560 PE=3 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55742: 54750-55179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007229_080 0.0 - - Nonspecific lipid-transfer protein A, putative [Ricinus communis]
2 Hb_077731_030 0.0503266977 - - sterol desaturase, putative [Ricinus communis]
3 Hb_001989_030 0.1212370496 - - PREDICTED: copper transport protein ATX1 [Jatropha curcas]
4 Hb_000028_080 0.1633743078 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
5 Hb_022092_080 0.1717469548 - - -
6 Hb_001635_140 0.1801488256 - - protein with unknown function [Ricinus communis]
7 Hb_002224_020 0.181303732 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
8 Hb_059226_010 0.1819561844 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
9 Hb_006198_100 0.1824945789 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
10 Hb_149882_010 0.1851776203 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
11 Hb_001863_330 0.1855392617 - - RNA-binding region-containing protein, putative [Ricinus communis]
12 Hb_000185_180 0.188839085 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
13 Hb_127839_010 0.1900479664 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
14 Hb_000959_320 0.1910381418 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
15 Hb_048476_130 0.1913195538 - - scab resistance family protein [Populus trichocarpa]
16 Hb_000563_470 0.191532925 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
17 Hb_143766_070 0.1940039056 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
18 Hb_005253_020 0.196540178 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
19 Hb_001863_010 0.1989756238 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
20 Hb_007632_070 0.199106689 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007229_080 Hb_007229_080 Hb_077731_030 Hb_077731_030 Hb_007229_080--Hb_077731_030 Hb_001989_030 Hb_001989_030 Hb_007229_080--Hb_001989_030 Hb_000028_080 Hb_000028_080 Hb_007229_080--Hb_000028_080 Hb_022092_080 Hb_022092_080 Hb_007229_080--Hb_022092_080 Hb_001635_140 Hb_001635_140 Hb_007229_080--Hb_001635_140 Hb_002224_020 Hb_002224_020 Hb_007229_080--Hb_002224_020 Hb_077731_030--Hb_001989_030 Hb_077731_030--Hb_000028_080 Hb_002030_130 Hb_002030_130 Hb_077731_030--Hb_002030_130 Hb_006198_100 Hb_006198_100 Hb_077731_030--Hb_006198_100 Hb_059226_010 Hb_059226_010 Hb_077731_030--Hb_059226_010 Hb_001989_030--Hb_000028_080 Hb_000538_290 Hb_000538_290 Hb_001989_030--Hb_000538_290 Hb_001989_030--Hb_006198_100 Hb_001989_030--Hb_059226_010 Hb_001007_020 Hb_001007_020 Hb_000028_080--Hb_001007_020 Hb_000072_230 Hb_000072_230 Hb_000028_080--Hb_000072_230 Hb_174639_010 Hb_174639_010 Hb_000028_080--Hb_174639_010 Hb_003750_120 Hb_003750_120 Hb_000028_080--Hb_003750_120 Hb_000028_080--Hb_006198_100 Hb_000342_040 Hb_000342_040 Hb_000028_080--Hb_000342_040 Hb_022092_080--Hb_077731_030 Hb_143766_070 Hb_143766_070 Hb_022092_080--Hb_143766_070 Hb_002592_020 Hb_002592_020 Hb_022092_080--Hb_002592_020 Hb_022092_080--Hb_001989_030 Hb_000959_320 Hb_000959_320 Hb_022092_080--Hb_000959_320 Hb_004933_010 Hb_004933_010 Hb_001635_140--Hb_004933_010 Hb_011628_010 Hb_011628_010 Hb_001635_140--Hb_011628_010 Hb_004705_060 Hb_004705_060 Hb_001635_140--Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_001635_140--Hb_009367_070 Hb_000207_060 Hb_000207_060 Hb_001635_140--Hb_000207_060 Hb_000333_140 Hb_000333_140 Hb_001635_140--Hb_000333_140 Hb_149882_010 Hb_149882_010 Hb_002224_020--Hb_149882_010 Hb_003427_030 Hb_003427_030 Hb_002224_020--Hb_003427_030 Hb_087992_010 Hb_087992_010 Hb_002224_020--Hb_087992_010 Hb_000185_180 Hb_000185_180 Hb_002224_020--Hb_000185_180 Hb_001863_330 Hb_001863_330 Hb_002224_020--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_002224_020--Hb_127839_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.21434 1.77967 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.211986 0 0.188961 0.351631

CAGE analysis