Hb_000099_140

Information

Type -
Description -
Location Contig99: 180719-184061
Sequence    

Annotation

kegg
ID rcu:RCOM_1689470
description hypothetical protein
nr
ID XP_012086798.1
description PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
swissprot
ID Q9LS46
description Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1
trembl
ID B9RCK3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689470 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_140 0.0 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
2 Hb_053272_010 0.2012109788 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
3 Hb_000005_140 0.2071140581 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
4 Hb_069338_010 0.2180214993 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002119_140 0.2268680625 - - PREDICTED: uncharacterized protein LOC105634172 [Jatropha curcas]
6 Hb_002876_340 0.2422582356 - - hypothetical protein POPTR_0013s11770g [Populus trichocarpa]
7 Hb_022092_080 0.253729609 - - -
8 Hb_000496_110 0.254488419 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
9 Hb_009662_070 0.2646738814 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
10 Hb_007574_040 0.2685703698 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
11 Hb_006569_080 0.2734006519 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
12 Hb_002592_020 0.2763732052 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
13 Hb_002150_100 0.2764436112 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Jatropha curcas]
14 Hb_005914_120 0.2804270408 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
15 Hb_000438_120 0.2806011314 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_002183_080 0.2839897587 - - catalytic, putative [Ricinus communis]
17 Hb_002401_020 0.2851795412 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
18 Hb_000510_280 0.2876771115 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
19 Hb_080192_010 0.291680189 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_001221_450 0.2929649209 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000099_140 Hb_000099_140 Hb_053272_010 Hb_053272_010 Hb_000099_140--Hb_053272_010 Hb_000005_140 Hb_000005_140 Hb_000099_140--Hb_000005_140 Hb_069338_010 Hb_069338_010 Hb_000099_140--Hb_069338_010 Hb_002119_140 Hb_002119_140 Hb_000099_140--Hb_002119_140 Hb_002876_340 Hb_002876_340 Hb_000099_140--Hb_002876_340 Hb_022092_080 Hb_022092_080 Hb_000099_140--Hb_022092_080 Hb_053272_010--Hb_069338_010 Hb_009662_070 Hb_009662_070 Hb_053272_010--Hb_009662_070 Hb_053272_010--Hb_000005_140 Hb_002401_020 Hb_002401_020 Hb_053272_010--Hb_002401_020 Hb_002025_040 Hb_002025_040 Hb_053272_010--Hb_002025_040 Hb_000005_140--Hb_069338_010 Hb_000438_120 Hb_000438_120 Hb_000005_140--Hb_000438_120 Hb_000005_140--Hb_009662_070 Hb_005914_120 Hb_005914_120 Hb_000005_140--Hb_005914_120 Hb_002968_050 Hb_002968_050 Hb_000005_140--Hb_002968_050 Hb_002759_050 Hb_002759_050 Hb_000005_140--Hb_002759_050 Hb_069338_010--Hb_009662_070 Hb_002183_080 Hb_002183_080 Hb_069338_010--Hb_002183_080 Hb_069338_010--Hb_002968_050 Hb_002150_100 Hb_002150_100 Hb_002119_140--Hb_002150_100 Hb_001221_450 Hb_001221_450 Hb_002119_140--Hb_001221_450 Hb_002374_410 Hb_002374_410 Hb_002119_140--Hb_002374_410 Hb_007574_040 Hb_007574_040 Hb_002119_140--Hb_007574_040 Hb_002119_140--Hb_022092_080 Hb_006569_080 Hb_006569_080 Hb_002876_340--Hb_006569_080 Hb_000103_070 Hb_000103_070 Hb_002876_340--Hb_000103_070 Hb_003097_160 Hb_003097_160 Hb_002876_340--Hb_003097_160 Hb_028396_020 Hb_028396_020 Hb_002876_340--Hb_028396_020 Hb_084147_010 Hb_084147_010 Hb_002876_340--Hb_084147_010 Hb_005542_070 Hb_005542_070 Hb_002876_340--Hb_005542_070 Hb_007229_080 Hb_007229_080 Hb_022092_080--Hb_007229_080 Hb_077731_030 Hb_077731_030 Hb_022092_080--Hb_077731_030 Hb_143766_070 Hb_143766_070 Hb_022092_080--Hb_143766_070 Hb_002592_020 Hb_002592_020 Hb_022092_080--Hb_002592_020 Hb_001989_030 Hb_001989_030 Hb_022092_080--Hb_001989_030 Hb_000959_320 Hb_000959_320 Hb_022092_080--Hb_000959_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.042174 0.020018 0.128914 0.628393 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.303456 0 0.0259194 0.318788

CAGE analysis