Hb_002374_410

Information

Type -
Description -
Location Contig2374: 370588-371274
Sequence    

Annotation

kegg
ID rcu:RCOM_1030640
description zinc finger protein, putative
nr
ID XP_002513754.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SPL2
description E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1
trembl
ID B9RJ35
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1030640 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase ring1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24907: 366240-369779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_410 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001221_450 0.17316804 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000622_120 0.1770224304 - - hypothetical protein [Hevea brasiliensis]
4 Hb_000622_230 0.2053105776 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
5 Hb_011671_350 0.2137010435 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
6 Hb_007574_040 0.2210859466 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
7 Hb_000054_010 0.223679857 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_002316_080 0.2265161116 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
9 Hb_166635_010 0.2300142163 - - ptm1, putative [Ricinus communis]
10 Hb_000462_070 0.2304555786 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
11 Hb_002119_140 0.2331037426 - - PREDICTED: uncharacterized protein LOC105634172 [Jatropha curcas]
12 Hb_000622_190 0.2351193913 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
13 Hb_012090_030 0.2351979085 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
14 Hb_010883_180 0.2369398103 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
15 Hb_102772_010 0.238571753 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000398_070 0.2393463349 - - hypothetical protein VITISV_011880 [Vitis vinifera]
17 Hb_048384_010 0.2398497968 - - PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
18 Hb_000302_320 0.2425558267 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
19 Hb_000496_110 0.2432290348 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
20 Hb_011861_090 0.2435390832 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_410 Hb_002374_410 Hb_001221_450 Hb_001221_450 Hb_002374_410--Hb_001221_450 Hb_000622_120 Hb_000622_120 Hb_002374_410--Hb_000622_120 Hb_000622_230 Hb_000622_230 Hb_002374_410--Hb_000622_230 Hb_011671_350 Hb_011671_350 Hb_002374_410--Hb_011671_350 Hb_007574_040 Hb_007574_040 Hb_002374_410--Hb_007574_040 Hb_000054_010 Hb_000054_010 Hb_002374_410--Hb_000054_010 Hb_000398_070 Hb_000398_070 Hb_001221_450--Hb_000398_070 Hb_001894_020 Hb_001894_020 Hb_001221_450--Hb_001894_020 Hb_000103_070 Hb_000103_070 Hb_001221_450--Hb_000103_070 Hb_002119_140 Hb_002119_140 Hb_001221_450--Hb_002119_140 Hb_001584_270 Hb_001584_270 Hb_001221_450--Hb_001584_270 Hb_000622_120--Hb_000622_230 Hb_102772_010 Hb_102772_010 Hb_000622_120--Hb_102772_010 Hb_000622_190 Hb_000622_190 Hb_000622_120--Hb_000622_190 Hb_000115_200 Hb_000115_200 Hb_000622_120--Hb_000115_200 Hb_000622_120--Hb_007574_040 Hb_177208_010 Hb_177208_010 Hb_000622_120--Hb_177208_010 Hb_000106_010 Hb_000106_010 Hb_000622_230--Hb_000106_010 Hb_000622_230--Hb_102772_010 Hb_025193_010 Hb_025193_010 Hb_000622_230--Hb_025193_010 Hb_000622_230--Hb_177208_010 Hb_002263_050 Hb_002263_050 Hb_000622_230--Hb_002263_050 Hb_001153_040 Hb_001153_040 Hb_011671_350--Hb_001153_040 Hb_000389_040 Hb_000389_040 Hb_011671_350--Hb_000389_040 Hb_103942_030 Hb_103942_030 Hb_011671_350--Hb_103942_030 Hb_000995_020 Hb_000995_020 Hb_011671_350--Hb_000995_020 Hb_000963_210 Hb_000963_210 Hb_011671_350--Hb_000963_210 Hb_000297_140 Hb_000297_140 Hb_007574_040--Hb_000297_140 Hb_008695_220 Hb_008695_220 Hb_007574_040--Hb_008695_220 Hb_007574_040--Hb_000054_010 Hb_002759_030 Hb_002759_030 Hb_007574_040--Hb_002759_030 Hb_007574_040--Hb_000622_190 Hb_030565_100 Hb_030565_100 Hb_000054_010--Hb_030565_100 Hb_010883_180 Hb_010883_180 Hb_000054_010--Hb_010883_180 Hb_001186_110 Hb_001186_110 Hb_000054_010--Hb_001186_110 Hb_007311_050 Hb_007311_050 Hb_000054_010--Hb_007311_050 Hb_174541_030 Hb_174541_030 Hb_000054_010--Hb_174541_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.275382 1.67643 0.0674736 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.195864 0.116244 0.0531725 0.386464

CAGE analysis