Hb_001153_040

Information

Type -
Description -
Location Contig1153: 11939-12874
Sequence    

Annotation

kegg
ID rcu:RCOM_1682510
description hypothetical protein
nr
ID XP_011029136.1
description PREDICTED: uncharacterized protein LOC105128973 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RBZ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1682510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04594: 11698-13179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_040 0.0 - - PREDICTED: uncharacterized protein LOC105128973 [Populus euphratica]
2 Hb_048476_130 0.1721569593 - - scab resistance family protein [Populus trichocarpa]
3 Hb_017908_010 0.1746291611 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004933_010 0.1769425738 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
5 Hb_000413_120 0.1785110596 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
6 Hb_006483_070 0.1796499365 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_000742_290 0.1797702308 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_001059_110 0.1816285208 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
9 Hb_000963_210 0.1824035426 - - structural constituent of cell wall, putative [Ricinus communis]
10 Hb_002811_070 0.1855747766 - - Cytidine/deoxycytidylate deaminase family protein isoform 1 [Theobroma cacao]
11 Hb_010690_010 0.1877806733 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
12 Hb_001882_080 0.1893772985 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103324347 [Prunus mume]
13 Hb_011671_350 0.1894954282 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
14 Hb_001635_140 0.1904687374 - - protein with unknown function [Ricinus communis]
15 Hb_002783_280 0.1916235703 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
16 Hb_000417_090 0.1917966981 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_010381_100 0.1924847621 - - Phospholipase D epsilon [Morus notabilis]
18 Hb_000139_520 0.1930225148 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
19 Hb_002228_120 0.1947983332 - - potassium channel beta, putative [Ricinus communis]
20 Hb_007290_040 0.195047682 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001153_040 Hb_001153_040 Hb_048476_130 Hb_048476_130 Hb_001153_040--Hb_048476_130 Hb_017908_010 Hb_017908_010 Hb_001153_040--Hb_017908_010 Hb_004933_010 Hb_004933_010 Hb_001153_040--Hb_004933_010 Hb_000413_120 Hb_000413_120 Hb_001153_040--Hb_000413_120 Hb_006483_070 Hb_006483_070 Hb_001153_040--Hb_006483_070 Hb_000742_290 Hb_000742_290 Hb_001153_040--Hb_000742_290 Hb_001059_110 Hb_001059_110 Hb_048476_130--Hb_001059_110 Hb_003992_020 Hb_003992_020 Hb_048476_130--Hb_003992_020 Hb_005542_070 Hb_005542_070 Hb_048476_130--Hb_005542_070 Hb_012691_020 Hb_012691_020 Hb_048476_130--Hb_012691_020 Hb_002781_040 Hb_002781_040 Hb_048476_130--Hb_002781_040 Hb_003893_180 Hb_003893_180 Hb_048476_130--Hb_003893_180 Hb_000357_140 Hb_000357_140 Hb_017908_010--Hb_000357_140 Hb_000363_390 Hb_000363_390 Hb_017908_010--Hb_000363_390 Hb_001105_120 Hb_001105_120 Hb_017908_010--Hb_001105_120 Hb_015934_050 Hb_015934_050 Hb_017908_010--Hb_015934_050 Hb_000107_280 Hb_000107_280 Hb_017908_010--Hb_000107_280 Hb_162472_010 Hb_162472_010 Hb_017908_010--Hb_162472_010 Hb_001635_140 Hb_001635_140 Hb_004933_010--Hb_001635_140 Hb_011628_010 Hb_011628_010 Hb_004933_010--Hb_011628_010 Hb_002228_120 Hb_002228_120 Hb_004933_010--Hb_002228_120 Hb_004933_010--Hb_000413_120 Hb_000333_140 Hb_000333_140 Hb_004933_010--Hb_000333_140 Hb_015292_020 Hb_015292_020 Hb_004933_010--Hb_015292_020 Hb_000413_120--Hb_002228_120 Hb_000413_120--Hb_015292_020 Hb_140627_040 Hb_140627_040 Hb_000413_120--Hb_140627_040 Hb_000413_120--Hb_000333_140 Hb_009062_020 Hb_009062_020 Hb_000413_120--Hb_009062_020 Hb_001025_130 Hb_001025_130 Hb_006483_070--Hb_001025_130 Hb_001709_120 Hb_001709_120 Hb_006483_070--Hb_001709_120 Hb_001136_080 Hb_001136_080 Hb_006483_070--Hb_001136_080 Hb_006483_070--Hb_162472_010 Hb_006483_070--Hb_015292_020 Hb_001975_110 Hb_001975_110 Hb_006483_070--Hb_001975_110 Hb_004531_130 Hb_004531_130 Hb_000742_290--Hb_004531_130 Hb_000742_290--Hb_001059_110 Hb_000085_410 Hb_000085_410 Hb_000742_290--Hb_000085_410 Hb_010690_010 Hb_010690_010 Hb_000742_290--Hb_010690_010 Hb_001882_080 Hb_001882_080 Hb_000742_290--Hb_001882_080 Hb_000922_050 Hb_000922_050 Hb_000742_290--Hb_000922_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0883513 0.648108 1.29656 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0866117 0.0793467 0.0174447 0.176306

CAGE analysis