Hb_000107_280

Information

Type -
Description -
Location Contig107: 201304-227026
Sequence    

Annotation

kegg
ID rcu:RCOM_1563760
description serine/threonine protein kinase, putative (EC:2.7.11.13)
nr
ID XP_002514387.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID P93025
description Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2
trembl
ID B9RKW8
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1563760 PE=4 SV=1
Gene Ontology
ID GO:0000155
description phototropin-2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_280 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_004313_010 0.1036954139 - - PREDICTED: patatin-like protein 1 [Prunus mume]
3 Hb_031012_030 0.1039946699 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
4 Hb_186458_010 0.1137473848 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
5 Hb_083963_010 0.1230312792 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
6 Hb_005353_010 0.1231665476 - - Pectinesterase-1 precursor, putative [Ricinus communis]
7 Hb_000109_200 0.1293101899 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
8 Hb_000676_360 0.1297043648 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
9 Hb_017110_030 0.1321526345 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
10 Hb_000134_190 0.1393070492 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
11 Hb_017908_010 0.1394117733 - - conserved hypothetical protein [Ricinus communis]
12 Hb_023582_030 0.1415237384 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_011004_070 0.1438079694 - - hypothetical protein RCOM_1494490 [Ricinus communis]
14 Hb_000363_390 0.1440827841 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
15 Hb_007317_050 0.1443348897 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
16 Hb_000742_070 0.1455251318 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
17 Hb_002030_010 0.1467634145 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
18 Hb_009847_010 0.1479251176 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
19 Hb_015934_050 0.1506206361 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
20 Hb_000815_050 0.1509903743 - - PREDICTED: expansin-A1 [Populus euphratica]

Gene co-expression network

sample Hb_000107_280 Hb_000107_280 Hb_004313_010 Hb_004313_010 Hb_000107_280--Hb_004313_010 Hb_031012_030 Hb_031012_030 Hb_000107_280--Hb_031012_030 Hb_186458_010 Hb_186458_010 Hb_000107_280--Hb_186458_010 Hb_083963_010 Hb_083963_010 Hb_000107_280--Hb_083963_010 Hb_005353_010 Hb_005353_010 Hb_000107_280--Hb_005353_010 Hb_000109_200 Hb_000109_200 Hb_000107_280--Hb_000109_200 Hb_004313_010--Hb_031012_030 Hb_004313_010--Hb_186458_010 Hb_017110_030 Hb_017110_030 Hb_004313_010--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_004313_010--Hb_000676_360 Hb_004313_010--Hb_083963_010 Hb_004313_010--Hb_005353_010 Hb_031012_030--Hb_186458_010 Hb_031012_030--Hb_005353_010 Hb_031012_030--Hb_000109_200 Hb_031012_030--Hb_017110_030 Hb_031012_030--Hb_000676_360 Hb_186458_010--Hb_017110_030 Hb_186458_010--Hb_083963_010 Hb_023582_030 Hb_023582_030 Hb_186458_010--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_186458_010--Hb_000742_070 Hb_083963_010--Hb_017110_030 Hb_083963_010--Hb_000742_070 Hb_083963_010--Hb_023582_030 Hb_000134_190 Hb_000134_190 Hb_083963_010--Hb_000134_190 Hb_007317_050 Hb_007317_050 Hb_005353_010--Hb_007317_050 Hb_005353_010--Hb_000109_200 Hb_000792_100 Hb_000792_100 Hb_005353_010--Hb_000792_100 Hb_123713_010 Hb_123713_010 Hb_005353_010--Hb_123713_010 Hb_000020_170 Hb_000020_170 Hb_000109_200--Hb_000020_170 Hb_000109_200--Hb_007317_050 Hb_004686_040 Hb_004686_040 Hb_000109_200--Hb_004686_040 Hb_000109_200--Hb_000134_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.622652 0.83087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0143934 0 0.0216694 0 0.217526

CAGE analysis