Hb_015934_050

Information

Type -
Description -
Location Contig15934: 18562-18981
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06090g
description POPTRDRAFT_643394; hypothetical protein
nr
ID XP_012077897.1
description PREDICTED: transcription factor PAR2-like [Jatropha curcas]
swissprot
ID Q9SJH0
description Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1
trembl
ID A9P8M3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06090g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14148: 18529-18891 , PASA_asmbl_14149: 19323-19450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015934_050 0.0 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
2 Hb_000815_050 0.1143073691 - - PREDICTED: expansin-A1 [Populus euphratica]
3 Hb_000140_320 0.1199764646 - - delta-8 sphingolipid desaturase [Vernicia fordii]
4 Hb_002740_140 0.1203231418 - - hypothetical protein L484_022679 [Morus notabilis]
5 Hb_002311_030 0.1227524176 - - conserved hypothetical protein [Ricinus communis]
6 Hb_023582_030 0.1296568833 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000742_070 0.1311823816 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
8 Hb_000134_190 0.1317513501 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
9 Hb_087992_010 0.1340023703 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_000933_030 0.1340316549 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
11 Hb_004079_070 0.1351014573 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
12 Hb_083963_010 0.1357679152 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
13 Hb_017908_010 0.1360774809 - - conserved hypothetical protein [Ricinus communis]
14 Hb_017110_030 0.1363548265 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
15 Hb_012653_050 0.1376253267 - - hypothetical protein RCOM_0460020 [Ricinus communis]
16 Hb_000357_140 0.1385587851 - - hypothetical protein JCGZ_15089 [Jatropha curcas]
17 Hb_004686_040 0.1392166665 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
18 Hb_050898_040 0.1405611268 - - -
19 Hb_001863_330 0.1408987879 - - RNA-binding region-containing protein, putative [Ricinus communis]
20 Hb_001047_090 0.1421296354 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]

Gene co-expression network

sample Hb_015934_050 Hb_015934_050 Hb_000815_050 Hb_000815_050 Hb_015934_050--Hb_000815_050 Hb_000140_320 Hb_000140_320 Hb_015934_050--Hb_000140_320 Hb_002740_140 Hb_002740_140 Hb_015934_050--Hb_002740_140 Hb_002311_030 Hb_002311_030 Hb_015934_050--Hb_002311_030 Hb_023582_030 Hb_023582_030 Hb_015934_050--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_015934_050--Hb_000742_070 Hb_000815_050--Hb_000742_070 Hb_000815_050--Hb_023582_030 Hb_000816_140 Hb_000816_140 Hb_000815_050--Hb_000816_140 Hb_000933_030 Hb_000933_030 Hb_000815_050--Hb_000933_030 Hb_004079_070 Hb_004079_070 Hb_000815_050--Hb_004079_070 Hb_000134_190 Hb_000134_190 Hb_000815_050--Hb_000134_190 Hb_000103_450 Hb_000103_450 Hb_000140_320--Hb_000103_450 Hb_010883_170 Hb_010883_170 Hb_000140_320--Hb_010883_170 Hb_001047_090 Hb_001047_090 Hb_000140_320--Hb_001047_090 Hb_000140_320--Hb_002311_030 Hb_006922_120 Hb_006922_120 Hb_000140_320--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_000140_320--Hb_053264_010 Hb_002740_140--Hb_002311_030 Hb_057862_010 Hb_057862_010 Hb_002740_140--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_002740_140--Hb_162450_010 Hb_049955_010 Hb_049955_010 Hb_002740_140--Hb_049955_010 Hb_002740_140--Hb_000815_050 Hb_050898_040 Hb_050898_040 Hb_002740_140--Hb_050898_040 Hb_004162_200 Hb_004162_200 Hb_002311_030--Hb_004162_200 Hb_007113_060 Hb_007113_060 Hb_002311_030--Hb_007113_060 Hb_009151_010 Hb_009151_010 Hb_002311_030--Hb_009151_010 Hb_002311_030--Hb_057862_010 Hb_002311_030--Hb_162450_010 Hb_023582_030--Hb_000134_190 Hb_023582_030--Hb_000742_070 Hb_017110_030 Hb_017110_030 Hb_023582_030--Hb_017110_030 Hb_023582_030--Hb_000933_030 Hb_004686_040 Hb_004686_040 Hb_023582_030--Hb_004686_040 Hb_186458_010 Hb_186458_010 Hb_023582_030--Hb_186458_010 Hb_000742_070--Hb_017110_030 Hb_000742_070--Hb_000134_190 Hb_000742_070--Hb_000933_030 Hb_083963_010 Hb_083963_010 Hb_000742_070--Hb_083963_010 Hb_000742_070--Hb_186458_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.73791 5.61565 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.231855 0.121295 2.03948

CAGE analysis