Hb_017908_010

Information

Type -
Description -
Location Contig17908: 16579-17106
Sequence    

Annotation

kegg
ID rcu:RCOM_0449900
description hypothetical protein
nr
ID XP_002533586.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LZ60
description Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana GN=SMR3 PE=2 SV=1
trembl
ID B9T5R7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0449900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17320: 17538-17659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017908_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000357_140 0.113070098 - - hypothetical protein JCGZ_15089 [Jatropha curcas]
3 Hb_000363_390 0.1151478384 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
4 Hb_001105_120 0.1349717013 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
5 Hb_015934_050 0.1360774809 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
6 Hb_000107_280 0.1394117733 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_162472_010 0.1431539634 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000413_120 0.1536082031 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
9 Hb_001709_120 0.1539584613 - - hypothetical protein RCOM_1313640 [Ricinus communis]
10 Hb_000140_320 0.1557870999 - - delta-8 sphingolipid desaturase [Vernicia fordii]
11 Hb_006483_070 0.1586228151 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_001025_130 0.1595410181 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
13 Hb_001673_090 0.1599998418 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
14 Hb_004195_070 0.1602901726 - - cytochrome P450, putative [Ricinus communis]
15 Hb_004933_010 0.1603732443 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
16 Hb_174639_010 0.1606761378 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000320_010 0.1650765236 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000109_200 0.1685820089 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
19 Hb_001975_110 0.1688346954 - - -
20 Hb_031012_030 0.1691305606 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]

Gene co-expression network

sample Hb_017908_010 Hb_017908_010 Hb_000357_140 Hb_000357_140 Hb_017908_010--Hb_000357_140 Hb_000363_390 Hb_000363_390 Hb_017908_010--Hb_000363_390 Hb_001105_120 Hb_001105_120 Hb_017908_010--Hb_001105_120 Hb_015934_050 Hb_015934_050 Hb_017908_010--Hb_015934_050 Hb_000107_280 Hb_000107_280 Hb_017908_010--Hb_000107_280 Hb_162472_010 Hb_162472_010 Hb_017908_010--Hb_162472_010 Hb_059554_010 Hb_059554_010 Hb_000357_140--Hb_059554_010 Hb_000357_140--Hb_015934_050 Hb_000357_140--Hb_000107_280 Hb_000020_170 Hb_000020_170 Hb_000357_140--Hb_000020_170 Hb_000109_200 Hb_000109_200 Hb_000357_140--Hb_000109_200 Hb_002818_060 Hb_002818_060 Hb_000363_390--Hb_002818_060 Hb_002894_060 Hb_002894_060 Hb_000363_390--Hb_002894_060 Hb_001007_020 Hb_001007_020 Hb_000363_390--Hb_001007_020 Hb_000320_010 Hb_000320_010 Hb_000363_390--Hb_000320_010 Hb_174639_010 Hb_174639_010 Hb_000363_390--Hb_174639_010 Hb_003085_070 Hb_003085_070 Hb_000363_390--Hb_003085_070 Hb_132840_150 Hb_132840_150 Hb_001105_120--Hb_132840_150 Hb_000417_090 Hb_000417_090 Hb_001105_120--Hb_000417_090 Hb_000190_170 Hb_000190_170 Hb_001105_120--Hb_000190_170 Hb_004117_090 Hb_004117_090 Hb_001105_120--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_001105_120--Hb_010381_100 Hb_000815_050 Hb_000815_050 Hb_015934_050--Hb_000815_050 Hb_000140_320 Hb_000140_320 Hb_015934_050--Hb_000140_320 Hb_002740_140 Hb_002740_140 Hb_015934_050--Hb_002740_140 Hb_002311_030 Hb_002311_030 Hb_015934_050--Hb_002311_030 Hb_023582_030 Hb_023582_030 Hb_015934_050--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_015934_050--Hb_000742_070 Hb_004313_010 Hb_004313_010 Hb_000107_280--Hb_004313_010 Hb_031012_030 Hb_031012_030 Hb_000107_280--Hb_031012_030 Hb_186458_010 Hb_186458_010 Hb_000107_280--Hb_186458_010 Hb_083963_010 Hb_083963_010 Hb_000107_280--Hb_083963_010 Hb_005353_010 Hb_005353_010 Hb_000107_280--Hb_005353_010 Hb_000107_280--Hb_000109_200 Hb_001025_130 Hb_001025_130 Hb_162472_010--Hb_001025_130 Hb_001975_110 Hb_001975_110 Hb_162472_010--Hb_001975_110 Hb_002276_080 Hb_002276_080 Hb_162472_010--Hb_002276_080 Hb_006483_070 Hb_006483_070 Hb_162472_010--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_162472_010--Hb_001709_120 Hb_000005_290 Hb_000005_290 Hb_162472_010--Hb_000005_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119838 0.723236 20.7593 35.1092 0.0989837 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.4801 0.199766 7.85263

CAGE analysis