Hb_000398_070

Information

Type -
Description -
Location Contig398: 132720-133202
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID CAN60890.1
description hypothetical protein VITISV_011880 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B326
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_070 0.0 - - hypothetical protein VITISV_011880 [Vitis vinifera]
2 Hb_000997_080 0.1284955729 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
3 Hb_012395_250 0.1417348981 - - hypothetical protein RCOM_1217340 [Ricinus communis]
4 Hb_000408_060 0.1504594389 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
5 Hb_000462_070 0.1580613039 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
6 Hb_000093_010 0.1581206438 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
7 Hb_002600_120 0.1602909395 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
8 Hb_000115_200 0.1603878863 - - PREDICTED: endonuclease 2 [Jatropha curcas]
9 Hb_000020_140 0.1622054525 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
10 Hb_002701_030 0.1628539987 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_028514_010 0.1640280895 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
12 Hb_004531_160 0.1663501411 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
13 Hb_000003_610 0.1663978776 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
14 Hb_003893_180 0.16672253 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
15 Hb_000103_070 0.1675478511 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
16 Hb_003090_220 0.1678153221 - - PREDICTED: copper transporter 4 [Jatropha curcas]
17 Hb_001584_270 0.1690491209 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002783_280 0.1698277669 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
19 Hb_001216_060 0.1725196743 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010337_040 0.1726019897 - - -

Gene co-expression network

sample Hb_000398_070 Hb_000398_070 Hb_000997_080 Hb_000997_080 Hb_000398_070--Hb_000997_080 Hb_012395_250 Hb_012395_250 Hb_000398_070--Hb_012395_250 Hb_000408_060 Hb_000408_060 Hb_000398_070--Hb_000408_060 Hb_000462_070 Hb_000462_070 Hb_000398_070--Hb_000462_070 Hb_000093_010 Hb_000093_010 Hb_000398_070--Hb_000093_010 Hb_002600_120 Hb_002600_120 Hb_000398_070--Hb_002600_120 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000997_080--Hb_000984_130 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000011_280 Hb_000011_280 Hb_000997_080--Hb_000011_280 Hb_006788_110 Hb_006788_110 Hb_000997_080--Hb_006788_110 Hb_012395_250--Hb_000093_010 Hb_028514_010 Hb_028514_010 Hb_012395_250--Hb_028514_010 Hb_000327_320 Hb_000327_320 Hb_012395_250--Hb_000327_320 Hb_000645_080 Hb_000645_080 Hb_012395_250--Hb_000645_080 Hb_003607_080 Hb_003607_080 Hb_012395_250--Hb_003607_080 Hb_001216_060 Hb_001216_060 Hb_012395_250--Hb_001216_060 Hb_003090_220 Hb_003090_220 Hb_000408_060--Hb_003090_220 Hb_002014_130 Hb_002014_130 Hb_000408_060--Hb_002014_130 Hb_001818_010 Hb_001818_010 Hb_000408_060--Hb_001818_010 Hb_006153_140 Hb_006153_140 Hb_000408_060--Hb_006153_140 Hb_003680_240 Hb_003680_240 Hb_000408_060--Hb_003680_240 Hb_000866_130 Hb_000866_130 Hb_000408_060--Hb_000866_130 Hb_000462_070--Hb_000984_130 Hb_000462_070--Hb_000997_080 Hb_002900_180 Hb_002900_180 Hb_000462_070--Hb_002900_180 Hb_000413_120 Hb_000413_120 Hb_000462_070--Hb_000413_120 Hb_000260_110 Hb_000260_110 Hb_000462_070--Hb_000260_110 Hb_000017_250 Hb_000017_250 Hb_000462_070--Hb_000017_250 Hb_000093_010--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_000093_010--Hb_003466_010 Hb_005648_020 Hb_005648_020 Hb_000093_010--Hb_005648_020 Hb_008021_050 Hb_008021_050 Hb_000093_010--Hb_008021_050 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_001688_030 Hb_001688_030 Hb_000093_010--Hb_001688_030 Hb_004531_160 Hb_004531_160 Hb_002600_120--Hb_004531_160 Hb_002600_120--Hb_002701_030 Hb_010142_060 Hb_010142_060 Hb_002600_120--Hb_010142_060 Hb_003849_170 Hb_003849_170 Hb_002600_120--Hb_003849_170 Hb_002600_120--Hb_000093_010 Hb_002600_120--Hb_005648_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.271555 1.64462 8.71804 0.305731 0.29289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.223327 0 0.512362 2.07097

CAGE analysis