Hb_001221_450

Information

Type -
Description -
Location Contig1221: 307712-308476
Sequence    

Annotation

kegg
ID rcu:RCOM_1505580
description hypothetical protein
nr
ID XP_002511155.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_450 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002374_410 0.17316804 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000398_070 0.1800630274 - - hypothetical protein VITISV_011880 [Vitis vinifera]
4 Hb_001894_020 0.1845667356 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP630 [Jatropha curcas]
5 Hb_000103_070 0.1975428015 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
6 Hb_002119_140 0.2055936064 - - PREDICTED: uncharacterized protein LOC105634172 [Jatropha curcas]
7 Hb_001584_270 0.2097311303 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000622_120 0.2112648196 - - hypothetical protein [Hevea brasiliensis]
9 Hb_000997_080 0.212520205 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
10 Hb_003055_100 0.2127172196 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
11 Hb_000115_200 0.2165448216 - - PREDICTED: endonuclease 2 [Jatropha curcas]
12 Hb_000959_320 0.2169862447 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
13 Hb_007574_040 0.217919392 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
14 Hb_000462_070 0.2182462976 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
15 Hb_002233_160 0.2190182867 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
16 Hb_002600_120 0.2199285829 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
17 Hb_143766_070 0.2202825077 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
18 Hb_000789_160 0.222932883 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
19 Hb_005253_020 0.226868834 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
20 Hb_000463_120 0.2277461858 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001221_450 Hb_001221_450 Hb_002374_410 Hb_002374_410 Hb_001221_450--Hb_002374_410 Hb_000398_070 Hb_000398_070 Hb_001221_450--Hb_000398_070 Hb_001894_020 Hb_001894_020 Hb_001221_450--Hb_001894_020 Hb_000103_070 Hb_000103_070 Hb_001221_450--Hb_000103_070 Hb_002119_140 Hb_002119_140 Hb_001221_450--Hb_002119_140 Hb_001584_270 Hb_001584_270 Hb_001221_450--Hb_001584_270 Hb_000622_120 Hb_000622_120 Hb_002374_410--Hb_000622_120 Hb_000622_230 Hb_000622_230 Hb_002374_410--Hb_000622_230 Hb_011671_350 Hb_011671_350 Hb_002374_410--Hb_011671_350 Hb_007574_040 Hb_007574_040 Hb_002374_410--Hb_007574_040 Hb_000054_010 Hb_000054_010 Hb_002374_410--Hb_000054_010 Hb_000997_080 Hb_000997_080 Hb_000398_070--Hb_000997_080 Hb_012395_250 Hb_012395_250 Hb_000398_070--Hb_012395_250 Hb_000408_060 Hb_000408_060 Hb_000398_070--Hb_000408_060 Hb_000462_070 Hb_000462_070 Hb_000398_070--Hb_000462_070 Hb_000093_010 Hb_000093_010 Hb_000398_070--Hb_000093_010 Hb_002600_120 Hb_002600_120 Hb_000398_070--Hb_002600_120 Hb_000005_020 Hb_000005_020 Hb_001894_020--Hb_000005_020 Hb_011994_020 Hb_011994_020 Hb_001894_020--Hb_011994_020 Hb_001894_020--Hb_000408_060 Hb_132381_010 Hb_132381_010 Hb_001894_020--Hb_132381_010 Hb_015978_020 Hb_015978_020 Hb_001894_020--Hb_015978_020 Hb_000789_160 Hb_000789_160 Hb_001894_020--Hb_000789_160 Hb_000103_070--Hb_002600_120 Hb_000003_280 Hb_000003_280 Hb_000103_070--Hb_000003_280 Hb_003893_180 Hb_003893_180 Hb_000103_070--Hb_003893_180 Hb_002781_040 Hb_002781_040 Hb_000103_070--Hb_002781_040 Hb_006002_050 Hb_006002_050 Hb_000103_070--Hb_006002_050 Hb_006788_110 Hb_006788_110 Hb_000103_070--Hb_006788_110 Hb_002150_100 Hb_002150_100 Hb_002119_140--Hb_002150_100 Hb_000099_140 Hb_000099_140 Hb_002119_140--Hb_000099_140 Hb_002119_140--Hb_002374_410 Hb_002119_140--Hb_007574_040 Hb_022092_080 Hb_022092_080 Hb_002119_140--Hb_022092_080 Hb_000115_200 Hb_000115_200 Hb_001584_270--Hb_000115_200 Hb_003055_100 Hb_003055_100 Hb_001584_270--Hb_003055_100 Hb_001584_270--Hb_002600_120 Hb_002014_130 Hb_002014_130 Hb_001584_270--Hb_002014_130 Hb_006386_010 Hb_006386_010 Hb_001584_270--Hb_006386_010 Hb_005291_020 Hb_005291_020 Hb_001584_270--Hb_005291_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.356834 1.44217 0.0766858 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.148768 0 0.121713 0.434799

CAGE analysis