Hb_000005_020

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig5: 40573-42297
Sequence    

Annotation

kegg
ID rcu:RCOM_0475810
description protein with unknown function
nr
ID XP_002523744.1
description protein with unknown function [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCM5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0475810 PE=4 SV=1
Gene Ontology
ID GO:0005622
description platz transcription factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_020 0.0 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
2 Hb_005653_050 0.0998199335 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
3 Hb_001373_170 0.1011658226 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
4 Hb_004225_010 0.1014668563 - - -
5 Hb_001308_010 0.1054965903 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001454_420 0.1080756243 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_008008_040 0.1128978533 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
8 Hb_012114_090 0.114206824 - - tubulin beta chain, putative [Ricinus communis]
9 Hb_181908_010 0.1147298018 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
10 Hb_001456_030 0.1152128621 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
11 Hb_003580_020 0.1153367149 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000462_120 0.116875597 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
13 Hb_177208_010 0.1186616698 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
14 Hb_092010_010 0.1191979444 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
15 Hb_004957_010 0.1211161434 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
16 Hb_006717_060 0.1249262168 - - PREDICTED: peroxidase 42 [Jatropha curcas]
17 Hb_000997_220 0.1249501498 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
18 Hb_000445_410 0.1252832824 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
19 Hb_001894_020 0.1264284962 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP630 [Jatropha curcas]
20 Hb_000227_290 0.1268921001 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_020 Hb_000005_020 Hb_005653_050 Hb_005653_050 Hb_000005_020--Hb_005653_050 Hb_001373_170 Hb_001373_170 Hb_000005_020--Hb_001373_170 Hb_004225_010 Hb_004225_010 Hb_000005_020--Hb_004225_010 Hb_001308_010 Hb_001308_010 Hb_000005_020--Hb_001308_010 Hb_001454_420 Hb_001454_420 Hb_000005_020--Hb_001454_420 Hb_008008_040 Hb_008008_040 Hb_000005_020--Hb_008008_040 Hb_005653_050--Hb_004225_010 Hb_005653_050--Hb_001373_170 Hb_005653_050--Hb_001308_010 Hb_005653_050--Hb_001454_420 Hb_181908_010 Hb_181908_010 Hb_005653_050--Hb_181908_010 Hb_005653_050--Hb_008008_040 Hb_001373_170--Hb_001454_420 Hb_001373_170--Hb_008008_040 Hb_001373_170--Hb_181908_010 Hb_001373_170--Hb_004225_010 Hb_000445_410 Hb_000445_410 Hb_001373_170--Hb_000445_410 Hb_004225_010--Hb_001308_010 Hb_004225_010--Hb_001454_420 Hb_029584_030 Hb_029584_030 Hb_004225_010--Hb_029584_030 Hb_004225_010--Hb_181908_010 Hb_004957_010 Hb_004957_010 Hb_001308_010--Hb_004957_010 Hb_003754_010 Hb_003754_010 Hb_001308_010--Hb_003754_010 Hb_000997_220 Hb_000997_220 Hb_001308_010--Hb_000997_220 Hb_001308_010--Hb_001373_170 Hb_001454_420--Hb_181908_010 Hb_001454_420--Hb_008008_040 Hb_003858_010 Hb_003858_010 Hb_001454_420--Hb_003858_010 Hb_008008_040--Hb_181908_010 Hb_008008_040--Hb_000445_410 Hb_003793_010 Hb_003793_010 Hb_008008_040--Hb_003793_010 Hb_008008_040--Hb_003858_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.309286 2.54803 0.0399798 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0295735 0.706981

CAGE analysis