Hb_011994_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig11994: 44169-45170
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23610g
description POPTRDRAFT_770597; putative zinc finger family protein
nr
ID XP_011031622.1
description PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
swissprot
ID Q681X4
description Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
trembl
ID A0A067KE13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16179 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011994_020 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
2 Hb_001894_020 0.155599121 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP630 [Jatropha curcas]
3 Hb_011930_180 0.1626095599 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000903_040 0.1729004993 - - PREDICTED: pirin-like protein [Jatropha curcas]
5 Hb_000964_040 0.175507274 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
6 Hb_001754_130 0.176066598 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_000309_060 0.1780601643 - - hypothetical protein JCGZ_09609 [Jatropha curcas]
8 Hb_000358_060 0.1780745121 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
9 Hb_053264_010 0.1800775151 - - beta glucosidase [Hevea brasiliensis]
10 Hb_000003_610 0.1816374839 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
11 Hb_155666_010 0.1850145856 - - hypothetical protein JCGZ_01214 [Jatropha curcas]
12 Hb_031984_020 0.186057744 - - conserved hypothetical protein [Ricinus communis]
13 Hb_132381_010 0.1866168509 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_000997_080 0.1868944724 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
15 Hb_000408_060 0.1879372509 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
16 Hb_010337_040 0.1923888973 - - -
17 Hb_004846_190 0.1924668329 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
18 Hb_001789_230 0.1933097399 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000398_070 0.1951035744 - - hypothetical protein VITISV_011880 [Vitis vinifera]
20 Hb_004531_160 0.1951479295 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011994_020 Hb_011994_020 Hb_001894_020 Hb_001894_020 Hb_011994_020--Hb_001894_020 Hb_011930_180 Hb_011930_180 Hb_011994_020--Hb_011930_180 Hb_000903_040 Hb_000903_040 Hb_011994_020--Hb_000903_040 Hb_000964_040 Hb_000964_040 Hb_011994_020--Hb_000964_040 Hb_001754_130 Hb_001754_130 Hb_011994_020--Hb_001754_130 Hb_000309_060 Hb_000309_060 Hb_011994_020--Hb_000309_060 Hb_000005_020 Hb_000005_020 Hb_001894_020--Hb_000005_020 Hb_000408_060 Hb_000408_060 Hb_001894_020--Hb_000408_060 Hb_132381_010 Hb_132381_010 Hb_001894_020--Hb_132381_010 Hb_015978_020 Hb_015978_020 Hb_001894_020--Hb_015978_020 Hb_000789_160 Hb_000789_160 Hb_001894_020--Hb_000789_160 Hb_000049_270 Hb_000049_270 Hb_011930_180--Hb_000049_270 Hb_006889_030 Hb_006889_030 Hb_011930_180--Hb_006889_030 Hb_006570_090 Hb_006570_090 Hb_011930_180--Hb_006570_090 Hb_000692_100 Hb_000692_100 Hb_011930_180--Hb_000692_100 Hb_000482_120 Hb_000482_120 Hb_011930_180--Hb_000482_120 Hb_053264_010 Hb_053264_010 Hb_000903_040--Hb_053264_010 Hb_000417_210 Hb_000417_210 Hb_000903_040--Hb_000417_210 Hb_000676_230 Hb_000676_230 Hb_000903_040--Hb_000676_230 Hb_006846_040 Hb_006846_040 Hb_000903_040--Hb_006846_040 Hb_138585_010 Hb_138585_010 Hb_000903_040--Hb_138585_010 Hb_009783_010 Hb_009783_010 Hb_000903_040--Hb_009783_010 Hb_150299_010 Hb_150299_010 Hb_000964_040--Hb_150299_010 Hb_007122_020 Hb_007122_020 Hb_000964_040--Hb_007122_020 Hb_000964_040--Hb_009783_010 Hb_001789_230 Hb_001789_230 Hb_000964_040--Hb_001789_230 Hb_012132_050 Hb_012132_050 Hb_000964_040--Hb_012132_050 Hb_004607_060 Hb_004607_060 Hb_000964_040--Hb_004607_060 Hb_000635_100 Hb_000635_100 Hb_001754_130--Hb_000635_100 Hb_000910_060 Hb_000910_060 Hb_001754_130--Hb_000910_060 Hb_001277_010 Hb_001277_010 Hb_001754_130--Hb_001277_010 Hb_002972_050 Hb_002972_050 Hb_001754_130--Hb_002972_050 Hb_000742_220 Hb_000742_220 Hb_001754_130--Hb_000742_220 Hb_155666_010 Hb_155666_010 Hb_000309_060--Hb_155666_010 Hb_002391_240 Hb_002391_240 Hb_000309_060--Hb_002391_240 Hb_006992_010 Hb_006992_010 Hb_000309_060--Hb_006992_010 Hb_001855_020 Hb_001855_020 Hb_000309_060--Hb_001855_020 Hb_000003_580 Hb_000003_580 Hb_000309_060--Hb_000003_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0221392 0.118554 0.41809 0.0620645 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0319752 0.162692

CAGE analysis