Hb_000742_220

Information

Type -
Description -
Location Contig742: 215019-218679
Sequence    

Annotation

kegg
ID rcu:RCOM_1593870
description hypothetical protein
nr
ID XP_012071759.1
description PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R7R5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593870 PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna-directed rna polymerase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56506: 217798-218782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_220 0.0 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
2 Hb_011930_180 0.1807485326 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004242_090 0.1818857009 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
4 Hb_119044_010 0.1887647867 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
5 Hb_000193_210 0.1892812052 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
6 Hb_003097_160 0.1937145606 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
7 Hb_001357_050 0.1950104517 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
8 Hb_001754_130 0.1967280188 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_011994_020 0.1969142795 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
10 Hb_000236_290 0.197942487 - - organic anion transporter, putative [Ricinus communis]
11 Hb_002073_170 0.1985204447 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
12 Hb_011021_010 0.2005975932 - - kinase, putative [Ricinus communis]
13 Hb_000820_110 0.2015427614 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
14 Hb_005295_020 0.201846709 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
15 Hb_003177_040 0.2030411797 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
16 Hb_000933_170 0.2035749941 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
17 Hb_001450_040 0.2037668724 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
18 Hb_000077_100 0.2040105353 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
19 Hb_001951_080 0.204507134 - - O-acetyltransferase, putative [Ricinus communis]
20 Hb_001913_040 0.205308294 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000742_220 Hb_000742_220 Hb_011930_180 Hb_011930_180 Hb_000742_220--Hb_011930_180 Hb_004242_090 Hb_004242_090 Hb_000742_220--Hb_004242_090 Hb_119044_010 Hb_119044_010 Hb_000742_220--Hb_119044_010 Hb_000193_210 Hb_000193_210 Hb_000742_220--Hb_000193_210 Hb_003097_160 Hb_003097_160 Hb_000742_220--Hb_003097_160 Hb_001357_050 Hb_001357_050 Hb_000742_220--Hb_001357_050 Hb_000049_270 Hb_000049_270 Hb_011930_180--Hb_000049_270 Hb_006889_030 Hb_006889_030 Hb_011930_180--Hb_006889_030 Hb_011994_020 Hb_011994_020 Hb_011930_180--Hb_011994_020 Hb_006570_090 Hb_006570_090 Hb_011930_180--Hb_006570_090 Hb_000692_100 Hb_000692_100 Hb_011930_180--Hb_000692_100 Hb_000482_120 Hb_000482_120 Hb_011930_180--Hb_000482_120 Hb_001278_020 Hb_001278_020 Hb_004242_090--Hb_001278_020 Hb_002999_070 Hb_002999_070 Hb_004242_090--Hb_002999_070 Hb_001486_280 Hb_001486_280 Hb_004242_090--Hb_001486_280 Hb_003929_240 Hb_003929_240 Hb_004242_090--Hb_003929_240 Hb_004375_120 Hb_004375_120 Hb_004242_090--Hb_004375_120 Hb_003462_040 Hb_003462_040 Hb_004242_090--Hb_003462_040 Hb_002028_180 Hb_002028_180 Hb_119044_010--Hb_002028_180 Hb_001227_070 Hb_001227_070 Hb_119044_010--Hb_001227_070 Hb_002817_040 Hb_002817_040 Hb_119044_010--Hb_002817_040 Hb_001544_050 Hb_001544_050 Hb_119044_010--Hb_001544_050 Hb_001017_130 Hb_001017_130 Hb_119044_010--Hb_001017_130 Hb_000984_150 Hb_000984_150 Hb_119044_010--Hb_000984_150 Hb_000820_110 Hb_000820_110 Hb_000193_210--Hb_000820_110 Hb_000077_100 Hb_000077_100 Hb_000193_210--Hb_000077_100 Hb_003177_040 Hb_003177_040 Hb_000193_210--Hb_003177_040 Hb_001493_060 Hb_001493_060 Hb_000193_210--Hb_001493_060 Hb_000108_180 Hb_000108_180 Hb_000193_210--Hb_000108_180 Hb_000193_210--Hb_003462_040 Hb_001951_080 Hb_001951_080 Hb_003097_160--Hb_001951_080 Hb_012484_050 Hb_012484_050 Hb_003097_160--Hb_012484_050 Hb_000417_210 Hb_000417_210 Hb_003097_160--Hb_000417_210 Hb_005784_010 Hb_005784_010 Hb_003097_160--Hb_005784_010 Hb_006788_110 Hb_006788_110 Hb_003097_160--Hb_006788_110 Hb_000910_060 Hb_000910_060 Hb_003097_160--Hb_000910_060 Hb_004218_200 Hb_004218_200 Hb_001357_050--Hb_004218_200 Hb_064546_010 Hb_064546_010 Hb_001357_050--Hb_064546_010 Hb_000417_050 Hb_000417_050 Hb_001357_050--Hb_000417_050 Hb_003580_050 Hb_003580_050 Hb_001357_050--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_001357_050--Hb_004696_010 Hb_000012_330 Hb_000012_330 Hb_001357_050--Hb_000012_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0649292 0.0408065 0.396744 0.877049 0.125743 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.048649 0.134704 0.595779

CAGE analysis