Hb_004375_120

Information

Type -
Description -
Location Contig4375: 100335-101276
Sequence    

Annotation

kegg
ID rcu:RCOM_1179780
description heat shock protein binding protein, putative
nr
ID XP_012082826.1
description PREDICTED: dnaJ homolog subfamily B member 3-like [Jatropha curcas]
swissprot
ID Q0III6
description DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1
trembl
ID A0A067K7J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13976 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42534: 100247-101269 , PASA_asmbl_42535: 101941-107793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_120 0.0 - - PREDICTED: dnaJ homolog subfamily B member 3-like [Jatropha curcas]
2 Hb_000336_290 0.1187276792 - - leucine-rich repeat protein, putative [Ricinus communis]
3 Hb_002999_070 0.1235165473 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
4 Hb_000270_380 0.131768724 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
5 Hb_001486_280 0.1414171924 - - hypothetical protein RCOM_1321910 [Ricinus communis]
6 Hb_000622_050 0.1535533068 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002182_010 0.1547876094 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
8 Hb_004220_010 0.1581967072 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
9 Hb_004242_090 0.1590359531 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
10 Hb_012098_160 0.1598158298 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
11 Hb_002485_010 0.1604808457 - - PREDICTED: extensin [Jatropha curcas]
12 Hb_000904_120 0.1618567134 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000232_040 0.1640216697 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
14 Hb_002246_030 0.165265054 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_000031_180 0.1662356361 - - sarcosine oxidase, putative [Ricinus communis]
16 Hb_000083_210 0.166853291 - - Major facilitator superfamily protein, putative [Theobroma cacao]
17 Hb_012670_090 0.1670461565 - - GDSL-motif lipase/hydrolase family protein [Populus trichocarpa]
18 Hb_009023_010 0.1675301792 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
19 Hb_000500_240 0.1681394166 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000684_070 0.1686787687 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004375_120 Hb_004375_120 Hb_000336_290 Hb_000336_290 Hb_004375_120--Hb_000336_290 Hb_002999_070 Hb_002999_070 Hb_004375_120--Hb_002999_070 Hb_000270_380 Hb_000270_380 Hb_004375_120--Hb_000270_380 Hb_001486_280 Hb_001486_280 Hb_004375_120--Hb_001486_280 Hb_000622_050 Hb_000622_050 Hb_004375_120--Hb_000622_050 Hb_002182_010 Hb_002182_010 Hb_004375_120--Hb_002182_010 Hb_000500_240 Hb_000500_240 Hb_000336_290--Hb_000500_240 Hb_000336_290--Hb_000270_380 Hb_000031_180 Hb_000031_180 Hb_000336_290--Hb_000031_180 Hb_000599_150 Hb_000599_150 Hb_000336_290--Hb_000599_150 Hb_005694_160 Hb_005694_160 Hb_000336_290--Hb_005694_160 Hb_000329_440 Hb_000329_440 Hb_000336_290--Hb_000329_440 Hb_002999_070--Hb_000270_380 Hb_002999_070--Hb_001486_280 Hb_002485_010 Hb_002485_010 Hb_002999_070--Hb_002485_010 Hb_000345_550 Hb_000345_550 Hb_002999_070--Hb_000345_550 Hb_001951_080 Hb_001951_080 Hb_002999_070--Hb_001951_080 Hb_009023_010 Hb_009023_010 Hb_000270_380--Hb_009023_010 Hb_012098_160 Hb_012098_160 Hb_000270_380--Hb_012098_160 Hb_000270_380--Hb_001486_280 Hb_015561_010 Hb_015561_010 Hb_000270_380--Hb_015561_010 Hb_001512_130 Hb_001512_130 Hb_000270_380--Hb_001512_130 Hb_001486_280--Hb_012098_160 Hb_001486_280--Hb_009023_010 Hb_001486_280--Hb_002485_010 Hb_000904_120 Hb_000904_120 Hb_001486_280--Hb_000904_120 Hb_012484_050 Hb_012484_050 Hb_001486_280--Hb_012484_050 Hb_000012_330 Hb_000012_330 Hb_000622_050--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_000622_050--Hb_000976_400 Hb_004220_010 Hb_004220_010 Hb_000622_050--Hb_004220_010 Hb_000622_050--Hb_012098_160 Hb_005725_240 Hb_005725_240 Hb_000622_050--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_102179_010 Hb_102179_010 Hb_002182_010--Hb_102179_010 Hb_033363_040 Hb_033363_040 Hb_002182_010--Hb_033363_040 Hb_002246_030 Hb_002246_030 Hb_002182_010--Hb_002246_030 Hb_004835_020 Hb_004835_020 Hb_002182_010--Hb_004835_020 Hb_001047_210 Hb_001047_210 Hb_002182_010--Hb_001047_210 Hb_002182_010--Hb_000500_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222282 1.82404 7.78713 11.3531 1.23501 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0811668 0.283275 0 12.692

CAGE analysis