Hb_002972_050

Information

Type -
Description -
Location Contig2972: 55269-55541
Sequence    

Annotation

kegg
ID rcu:RCOM_0557150
description hypothetical protein
nr
ID XP_002520709.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3Z0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0557150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 032_F08r.ab1: 53852-74634

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002972_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002259_130 0.1748944288 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_121624_010 0.1834768336 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
4 Hb_000110_280 0.1854763885 - - PREDICTED: uncharacterized protein LOC105642012, partial [Jatropha curcas]
5 Hb_001754_130 0.1967023531 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_008253_050 0.2000546737 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
7 Hb_001104_220 0.2014328951 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
8 Hb_005622_040 0.2033538553 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
9 Hb_008441_010 0.2072433901 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_000193_360 0.2073563007 - - PREDICTED: uncharacterized protein At5g01610-like [Jatropha curcas]
11 Hb_005539_150 0.207479555 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
12 Hb_041139_010 0.2105038018 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
13 Hb_000654_020 0.2112466585 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
14 Hb_011501_020 0.2123579908 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
15 Hb_029386_010 0.2151745342 - - RALF-LIKE 27 family protein [Populus trichocarpa]
16 Hb_000265_030 0.2160067718 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
17 Hb_002245_060 0.2196009251 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
18 Hb_000809_010 0.2201417185 - - hypothetical protein JCGZ_12342 [Jatropha curcas]
19 Hb_002740_060 0.2221312191 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
20 Hb_000477_090 0.2231294813 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]

Gene co-expression network

sample Hb_002972_050 Hb_002972_050 Hb_002259_130 Hb_002259_130 Hb_002972_050--Hb_002259_130 Hb_121624_010 Hb_121624_010 Hb_002972_050--Hb_121624_010 Hb_000110_280 Hb_000110_280 Hb_002972_050--Hb_000110_280 Hb_001754_130 Hb_001754_130 Hb_002972_050--Hb_001754_130 Hb_008253_050 Hb_008253_050 Hb_002972_050--Hb_008253_050 Hb_001104_220 Hb_001104_220 Hb_002972_050--Hb_001104_220 Hb_001541_200 Hb_001541_200 Hb_002259_130--Hb_001541_200 Hb_026549_060 Hb_026549_060 Hb_002259_130--Hb_026549_060 Hb_136408_040 Hb_136408_040 Hb_002259_130--Hb_136408_040 Hb_001433_090 Hb_001433_090 Hb_002259_130--Hb_001433_090 Hb_005532_030 Hb_005532_030 Hb_002259_130--Hb_005532_030 Hb_002374_180 Hb_002374_180 Hb_002259_130--Hb_002374_180 Hb_002245_060 Hb_002245_060 Hb_121624_010--Hb_002245_060 Hb_001269_660 Hb_001269_660 Hb_121624_010--Hb_001269_660 Hb_025623_010 Hb_025623_010 Hb_121624_010--Hb_025623_010 Hb_011501_020 Hb_011501_020 Hb_121624_010--Hb_011501_020 Hb_001408_200 Hb_001408_200 Hb_121624_010--Hb_001408_200 Hb_000402_060 Hb_000402_060 Hb_121624_010--Hb_000402_060 Hb_101517_010 Hb_101517_010 Hb_000110_280--Hb_101517_010 Hb_001832_170 Hb_001832_170 Hb_000110_280--Hb_001832_170 Hb_000110_280--Hb_121624_010 Hb_000110_280--Hb_002259_130 Hb_000265_030 Hb_000265_030 Hb_000110_280--Hb_000265_030 Hb_011994_020 Hb_011994_020 Hb_001754_130--Hb_011994_020 Hb_000635_100 Hb_000635_100 Hb_001754_130--Hb_000635_100 Hb_000910_060 Hb_000910_060 Hb_001754_130--Hb_000910_060 Hb_001277_010 Hb_001277_010 Hb_001754_130--Hb_001277_010 Hb_000742_220 Hb_000742_220 Hb_001754_130--Hb_000742_220 Hb_041139_010 Hb_041139_010 Hb_008253_050--Hb_041139_010 Hb_011618_010 Hb_011618_010 Hb_008253_050--Hb_011618_010 Hb_001894_100 Hb_001894_100 Hb_008253_050--Hb_001894_100 Hb_005348_050 Hb_005348_050 Hb_008253_050--Hb_005348_050 Hb_000223_090 Hb_000223_090 Hb_008253_050--Hb_000223_090 Hb_005539_150 Hb_005539_150 Hb_008253_050--Hb_005539_150 Hb_005622_040 Hb_005622_040 Hb_001104_220--Hb_005622_040 Hb_001104_220--Hb_001277_010 Hb_001104_220--Hb_008253_050 Hb_001104_220--Hb_041139_010 Hb_032143_010 Hb_032143_010 Hb_001104_220--Hb_032143_010 Hb_008441_010 Hb_008441_010 Hb_001104_220--Hb_008441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.718025 1.66051 0.425073 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.355082 2.76493

CAGE analysis