Hb_002259_130

Information

Type -
Description -
Location Contig2259: 92789-95322
Sequence    

Annotation

kegg
ID rcu:RCOM_0612660
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002525662.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9M9C5
description Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1
trembl
ID B9SI43
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0612660 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable leucine-rich repeat receptor-like protein kinase at1g68400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23471: 94327-94424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_130 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001541_200 0.112315356 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
3 Hb_026549_060 0.1124839196 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_136408_040 0.1165366344 - - PREDICTED: protein NDR1 [Jatropha curcas]
5 Hb_001433_090 0.1203926814 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
6 Hb_005532_030 0.1216089844 - - DNA binding protein, putative [Ricinus communis]
7 Hb_002374_180 0.1223559302 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
8 Hb_020956_030 0.1246880856 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
9 Hb_002600_170 0.1285364933 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005842_010 0.1310255805 - - nitrate transporter, putative [Ricinus communis]
11 Hb_000424_140 0.1320387756 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_086300_010 0.1329554851 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_000670_070 0.1331200129 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
14 Hb_001657_020 0.1350561497 - - heat shock family protein [Populus trichocarpa]
15 Hb_033681_030 0.1357249972 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
16 Hb_007163_110 0.1371640314 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
17 Hb_006075_030 0.137864713 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
18 Hb_003162_060 0.1383182355 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_001512_130 0.139130684 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
20 Hb_002182_010 0.1405956538 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002259_130 Hb_002259_130 Hb_001541_200 Hb_001541_200 Hb_002259_130--Hb_001541_200 Hb_026549_060 Hb_026549_060 Hb_002259_130--Hb_026549_060 Hb_136408_040 Hb_136408_040 Hb_002259_130--Hb_136408_040 Hb_001433_090 Hb_001433_090 Hb_002259_130--Hb_001433_090 Hb_005532_030 Hb_005532_030 Hb_002259_130--Hb_005532_030 Hb_002374_180 Hb_002374_180 Hb_002259_130--Hb_002374_180 Hb_001657_020 Hb_001657_020 Hb_001541_200--Hb_001657_020 Hb_001541_200--Hb_026549_060 Hb_020956_030 Hb_020956_030 Hb_001541_200--Hb_020956_030 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_026549_060--Hb_001433_090 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_026549_060--Hb_020956_030 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_003152_020 Hb_003152_020 Hb_136408_040--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_136408_040--Hb_007163_110 Hb_002062_010 Hb_002062_010 Hb_136408_040--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_136408_040--Hb_001512_130 Hb_000017_180 Hb_000017_180 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_000002_110 Hb_000002_110 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_001433_090--Hb_005183_050 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_001433_090--Hb_020956_030 Hb_005532_030--Hb_002374_180 Hb_002336_050 Hb_002336_050 Hb_005532_030--Hb_002336_050 Hb_002600_170 Hb_002600_170 Hb_005532_030--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_005532_030--Hb_006831_090 Hb_086300_010 Hb_086300_010 Hb_005532_030--Hb_086300_010 Hb_000329_780 Hb_000329_780 Hb_005532_030--Hb_000329_780 Hb_002374_180--Hb_002600_170 Hb_002374_180--Hb_006831_090 Hb_002374_180--Hb_000329_780 Hb_006075_030 Hb_006075_030 Hb_002374_180--Hb_006075_030 Hb_008536_020 Hb_008536_020 Hb_002374_180--Hb_008536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0105108 0.0567377 0.107996 0.0106058 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00754125 0.159862

CAGE analysis