Hb_000110_280

Information

Type -
Description -
Location Contig110: 318324-318821
Sequence    

Annotation

kegg
ID rcu:RCOM_0353120
description hypothetical protein
nr
ID XP_012082075.1
description PREDICTED: uncharacterized protein LOC105642012, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9ST06
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353120 PE=4 SV=1
Gene Ontology
ID GO:0016021
description heavy metal-associated isoprenylated plant protein 26-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03072: 317965-321278 , PASA_asmbl_03073: 319386-321062
cDNA
(Sanger)
(ID:Location)		 007_C13.ab1: 319697-321278 , 015_N23.ab1: 319740-321278 , 032_L04.ab1: 319761-321278

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_280 0.0 - - PREDICTED: uncharacterized protein LOC105642012, partial [Jatropha curcas]
2 Hb_101517_010 0.1786061379 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
3 Hb_001832_170 0.182778518 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
4 Hb_002972_050 0.1854763885 - - conserved hypothetical protein [Ricinus communis]
5 Hb_121624_010 0.1879483068 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
6 Hb_002259_130 0.1898418105 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000265_030 0.1899040857 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
8 Hb_000270_340 0.1904621286 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
9 Hb_000005_370 0.1919136617 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
10 Hb_029386_010 0.1962861112 - - RALF-LIKE 27 family protein [Populus trichocarpa]
11 Hb_002245_060 0.1980232822 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
12 Hb_000122_230 0.1988200216 - - laccase, putative [Ricinus communis]
13 Hb_000997_370 0.1989984169 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
14 Hb_002400_300 0.1995745959 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
15 Hb_003849_070 0.2013067526 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
16 Hb_007620_020 0.2014217661 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_004837_080 0.2019735026 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
18 Hb_012239_060 0.2030739805 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
19 Hb_003358_030 0.2031453543 - - ankyrin-kinase, putative [Ricinus communis]
20 Hb_000608_190 0.2037578009 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]

Gene co-expression network

sample Hb_000110_280 Hb_000110_280 Hb_101517_010 Hb_101517_010 Hb_000110_280--Hb_101517_010 Hb_001832_170 Hb_001832_170 Hb_000110_280--Hb_001832_170 Hb_002972_050 Hb_002972_050 Hb_000110_280--Hb_002972_050 Hb_121624_010 Hb_121624_010 Hb_000110_280--Hb_121624_010 Hb_002259_130 Hb_002259_130 Hb_000110_280--Hb_002259_130 Hb_000265_030 Hb_000265_030 Hb_000110_280--Hb_000265_030 Hb_000395_250 Hb_000395_250 Hb_101517_010--Hb_000395_250 Hb_000031_210 Hb_000031_210 Hb_101517_010--Hb_000031_210 Hb_001006_110 Hb_001006_110 Hb_101517_010--Hb_001006_110 Hb_022693_020 Hb_022693_020 Hb_101517_010--Hb_022693_020 Hb_009393_140 Hb_009393_140 Hb_101517_010--Hb_009393_140 Hb_004052_030 Hb_004052_030 Hb_101517_010--Hb_004052_030 Hb_000417_220 Hb_000417_220 Hb_001832_170--Hb_000417_220 Hb_000005_370 Hb_000005_370 Hb_001832_170--Hb_000005_370 Hb_002400_300 Hb_002400_300 Hb_001832_170--Hb_002400_300 Hb_000552_010 Hb_000552_010 Hb_001832_170--Hb_000552_010 Hb_000270_340 Hb_000270_340 Hb_001832_170--Hb_000270_340 Hb_000139_060 Hb_000139_060 Hb_001832_170--Hb_000139_060 Hb_002972_050--Hb_002259_130 Hb_002972_050--Hb_121624_010 Hb_001754_130 Hb_001754_130 Hb_002972_050--Hb_001754_130 Hb_008253_050 Hb_008253_050 Hb_002972_050--Hb_008253_050 Hb_001104_220 Hb_001104_220 Hb_002972_050--Hb_001104_220 Hb_002245_060 Hb_002245_060 Hb_121624_010--Hb_002245_060 Hb_001269_660 Hb_001269_660 Hb_121624_010--Hb_001269_660 Hb_025623_010 Hb_025623_010 Hb_121624_010--Hb_025623_010 Hb_011501_020 Hb_011501_020 Hb_121624_010--Hb_011501_020 Hb_001408_200 Hb_001408_200 Hb_121624_010--Hb_001408_200 Hb_000402_060 Hb_000402_060 Hb_121624_010--Hb_000402_060 Hb_001541_200 Hb_001541_200 Hb_002259_130--Hb_001541_200 Hb_026549_060 Hb_026549_060 Hb_002259_130--Hb_026549_060 Hb_136408_040 Hb_136408_040 Hb_002259_130--Hb_136408_040 Hb_001433_090 Hb_001433_090 Hb_002259_130--Hb_001433_090 Hb_005532_030 Hb_005532_030 Hb_002259_130--Hb_005532_030 Hb_002374_180 Hb_002374_180 Hb_002259_130--Hb_002374_180 Hb_002740_060 Hb_002740_060 Hb_000265_030--Hb_002740_060 Hb_032143_010 Hb_032143_010 Hb_000265_030--Hb_032143_010 Hb_005622_040 Hb_005622_040 Hb_000265_030--Hb_005622_040 Hb_000265_030--Hb_002245_060 Hb_010264_010 Hb_010264_010 Hb_000265_030--Hb_010264_010 Hb_005539_150 Hb_005539_150 Hb_000265_030--Hb_005539_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.156779 0.913409 2.79067 0.340807 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.394094 0 0 0.577819 5.21232

CAGE analysis