Hb_002876_340

Information

Type -
Description -
Location Contig2876: 312714-313571
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11770g
description hypothetical protein
nr
ID XP_006376297.1
description hypothetical protein POPTR_0013s11770g [Populus trichocarpa]
swissprot
ID F4IQJ4
description Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1
trembl
ID B9MW77
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11770g PE=4 SV=1
Gene Ontology
ID GO:0016023
description gibberellin-regulated protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 025_H23r.ab1: 313375-314150 , 036_K10r.ab1: 313375-314135

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_340 0.0 - - hypothetical protein POPTR_0013s11770g [Populus trichocarpa]
2 Hb_006569_080 0.1175822895 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
3 Hb_000103_070 0.1635718754 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
4 Hb_003097_160 0.1711182423 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
5 Hb_028396_020 0.1721908902 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
6 Hb_084147_010 0.1734417635 - - amino acid transporter, putative [Ricinus communis]
7 Hb_005542_070 0.173624108 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
8 Hb_002233_160 0.1737940906 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
9 Hb_000005_010 0.1744647062 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
10 Hb_014361_010 0.1748163828 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_001775_080 0.1763004891 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
12 Hb_002894_080 0.1766059533 - - conserved hypothetical protein [Ricinus communis]
13 Hb_029510_120 0.1776665742 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
14 Hb_000030_130 0.1818753799 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_002781_040 0.1822551414 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000297_140 0.1823647484 - - hypothetical protein RCOM_0293450 [Ricinus communis]
17 Hb_006750_010 0.1825844152 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
18 Hb_002759_030 0.1836921535 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
19 Hb_005914_120 0.185393836 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
20 Hb_007574_040 0.1861349284 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_340 Hb_002876_340 Hb_006569_080 Hb_006569_080 Hb_002876_340--Hb_006569_080 Hb_000103_070 Hb_000103_070 Hb_002876_340--Hb_000103_070 Hb_003097_160 Hb_003097_160 Hb_002876_340--Hb_003097_160 Hb_028396_020 Hb_028396_020 Hb_002876_340--Hb_028396_020 Hb_084147_010 Hb_084147_010 Hb_002876_340--Hb_084147_010 Hb_005542_070 Hb_005542_070 Hb_002876_340--Hb_005542_070 Hb_001775_080 Hb_001775_080 Hb_006569_080--Hb_001775_080 Hb_006750_010 Hb_006750_010 Hb_006569_080--Hb_006750_010 Hb_001699_080 Hb_001699_080 Hb_006569_080--Hb_001699_080 Hb_019516_060 Hb_019516_060 Hb_006569_080--Hb_019516_060 Hb_000820_110 Hb_000820_110 Hb_006569_080--Hb_000820_110 Hb_002600_120 Hb_002600_120 Hb_000103_070--Hb_002600_120 Hb_000003_280 Hb_000003_280 Hb_000103_070--Hb_000003_280 Hb_003893_180 Hb_003893_180 Hb_000103_070--Hb_003893_180 Hb_002781_040 Hb_002781_040 Hb_000103_070--Hb_002781_040 Hb_006002_050 Hb_006002_050 Hb_000103_070--Hb_006002_050 Hb_006788_110 Hb_006788_110 Hb_000103_070--Hb_006788_110 Hb_001951_080 Hb_001951_080 Hb_003097_160--Hb_001951_080 Hb_012484_050 Hb_012484_050 Hb_003097_160--Hb_012484_050 Hb_000417_210 Hb_000417_210 Hb_003097_160--Hb_000417_210 Hb_005784_010 Hb_005784_010 Hb_003097_160--Hb_005784_010 Hb_003097_160--Hb_006788_110 Hb_000910_060 Hb_000910_060 Hb_003097_160--Hb_000910_060 Hb_028396_020--Hb_006750_010 Hb_114917_010 Hb_114917_010 Hb_028396_020--Hb_114917_010 Hb_020378_020 Hb_020378_020 Hb_028396_020--Hb_020378_020 Hb_034168_050 Hb_034168_050 Hb_028396_020--Hb_034168_050 Hb_010222_040 Hb_010222_040 Hb_028396_020--Hb_010222_040 Hb_001677_040 Hb_001677_040 Hb_028396_020--Hb_001677_040 Hb_004241_110 Hb_004241_110 Hb_084147_010--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_084147_010--Hb_001102_160 Hb_031089_020 Hb_031089_020 Hb_084147_010--Hb_031089_020 Hb_012395_110 Hb_012395_110 Hb_084147_010--Hb_012395_110 Hb_003470_110 Hb_003470_110 Hb_084147_010--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_084147_010--Hb_030565_100 Hb_005542_070--Hb_002781_040 Hb_012368_050 Hb_012368_050 Hb_005542_070--Hb_012368_050 Hb_002233_160 Hb_002233_160 Hb_005542_070--Hb_002233_160 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_005542_070--Hb_000103_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199312 0.77512 1.59398 6.09175 0 0.193912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.737227 0 0.516055 3.2406

CAGE analysis